RNA 3D Hub //

Motif HL_78347.4 Version HL_78347.4 of this group appears in releases 3.95 to 3.98

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 61-62-53-43-5
1 HL_1N78_0011N780.54954CtRNA(Glu)U513A514G515U520A521G522cWWcWSntSH
2 HL_2DER_0042DER0.22615DtRNAU13A14G15C20A21G22cWWcWStSW
3 HL_5HR6_0015HR60.00005C tRNAU12A13G14C19A21G22cWWcWStSW
4 HL_5HR7_0045HR70.06855D tRNAU13A14G15C20A21G22cWWcWStSW
5 HL_6WBR_0046WBR0.58303BRNA (94-MER)C55C56U57G60G62G63cWW
6 HL_1QU2_0021QU20.63643T tRNAC31C32U33U36A38G39cWWncWWntSW
7 HL_1FFY_0021FFY0.63643TISOLEUCYL-TRNAC31C32U33U36A38G39cWWncWWntSW
8 HL_3DIL_0043DIL0.74180ARNA (174-MER)G149G150U151C152U153C154cWWncSW
9 HL_8CRE_1948CRE0.63730CM SSU rRNAU188G189U190U191U192G193cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAGAGGCCCAG3
CCUGAUAAG2
UAGCGGUUAG1
CCUUCGUGG1
GGUCUC1
UGUUUG1
Non-Watson-Crick part of the motif
SequenceCounts
AGAGGCCCA3
CUGAUAA2
AGCGGUUA1
CUUCGUG1
GUCU1
GUUU1

Release history

Release3.953.963.973.98
Date2025-03-262025-04-232025-05-212025-06-18
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
    • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.00 | Avg 0.51 | Max 0.89
    Help

    Coloring options:

    HL_1N78_001:HL_1N78_001 = 0HL_1N78_001:HL_2DER_004 = 0.5419HL_1N78_001:HL_5HR6_001 = 0.5495HL_1N78_001:HL_5HR7_004 = 0.5872HL_1N78_001:HL_6WBR_004 = 0.7981HL_1N78_001:HL_1QU2_002 = 0.8924HL_1N78_001:HL_1FFY_002 = 0.8924HL_1N78_001:HL_3DIL_004 = 0.8402HL_1N78_001:HL_8CRE_194 = 0.6213HL_2DER_004:HL_1N78_001 = 0.5419HL_2DER_004:HL_2DER_004 = 0HL_2DER_004:HL_5HR6_001 = 0.2261HL_2DER_004:HL_5HR7_004 = 0.2494HL_2DER_004:HL_6WBR_004 = 0.62HL_2DER_004:HL_1QU2_002 = 0.6459HL_2DER_004:HL_1FFY_002 = 0.6459HL_2DER_004:HL_3DIL_004 = 0.7361HL_2DER_004:HL_8CRE_194 = 0.6353HL_5HR6_001:HL_1N78_001 = 0.5495HL_5HR6_001:HL_2DER_004 = 0.2261HL_5HR6_001:HL_5HR6_001 = 0HL_5HR6_001:HL_5HR7_004 = 0.0685HL_5HR6_001:HL_6WBR_004 = 0.583HL_5HR6_001:HL_1QU2_002 = 0.6364HL_5HR6_001:HL_1FFY_002 = 0.6364HL_5HR6_001:HL_3DIL_004 = 0.7418HL_5HR6_001:HL_8CRE_194 = 0.6373HL_5HR7_004:HL_1N78_001 = 0.5872HL_5HR7_004:HL_2DER_004 = 0.2494HL_5HR7_004:HL_5HR6_001 = 0.0685HL_5HR7_004:HL_5HR7_004 = 0HL_5HR7_004:HL_6WBR_004 = 0.5832HL_5HR7_004:HL_1QU2_002 = 0.6439HL_5HR7_004:HL_1FFY_002 = 0.6439HL_5HR7_004:HL_3DIL_004 = 0.7571HL_5HR7_004:HL_8CRE_194 = 0.6414HL_6WBR_004:HL_1N78_001 = 0.7981HL_6WBR_004:HL_2DER_004 = 0.62HL_6WBR_004:HL_5HR6_001 = 0.583HL_6WBR_004:HL_5HR7_004 = 0.5832HL_6WBR_004:HL_6WBR_004 = 0HL_6WBR_004:HL_1QU2_002 = 0.3977HL_6WBR_004:HL_1FFY_002 = 0.3977HL_6WBR_004:HL_3DIL_004 = 0.5559HL_6WBR_004:HL_8CRE_194 = 0.6375HL_1QU2_002:HL_1N78_001 = 0.8924HL_1QU2_002:HL_2DER_004 = 0.6459HL_1QU2_002:HL_5HR6_001 = 0.6364HL_1QU2_002:HL_5HR7_004 = 0.6439HL_1QU2_002:HL_6WBR_004 = 0.3977HL_1QU2_002:HL_1QU2_002 = 0HL_1QU2_002:HL_1FFY_002 = 0.0002HL_1QU2_002:HL_3DIL_004 = 0.4966HL_1QU2_002:HL_8CRE_194 = 0.6677HL_1FFY_002:HL_1N78_001 = 0.8924HL_1FFY_002:HL_2DER_004 = 0.6459HL_1FFY_002:HL_5HR6_001 = 0.6364HL_1FFY_002:HL_5HR7_004 = 0.6439HL_1FFY_002:HL_6WBR_004 = 0.3977HL_1FFY_002:HL_1QU2_002 = 0.0002HL_1FFY_002:HL_1FFY_002 = 0HL_1FFY_002:HL_3DIL_004 = 0.4966HL_1FFY_002:HL_8CRE_194 = 0.6677HL_3DIL_004:HL_1N78_001 = 0.8402HL_3DIL_004:HL_2DER_004 = 0.7361HL_3DIL_004:HL_5HR6_001 = 0.7418HL_3DIL_004:HL_5HR7_004 = 0.7571HL_3DIL_004:HL_6WBR_004 = 0.5559HL_3DIL_004:HL_1QU2_002 = 0.4966HL_3DIL_004:HL_1FFY_002 = 0.4966HL_3DIL_004:HL_3DIL_004 = 0HL_3DIL_004:HL_8CRE_194 = 0.4128HL_8CRE_194:HL_1N78_001 = 0.6213HL_8CRE_194:HL_2DER_004 = 0.6353HL_8CRE_194:HL_5HR6_001 = 0.6373HL_8CRE_194:HL_5HR7_004 = 0.6414HL_8CRE_194:HL_6WBR_004 = 0.6375HL_8CRE_194:HL_1QU2_002 = 0.6677HL_8CRE_194:HL_1FFY_002 = 0.6677HL_8CRE_194:HL_3DIL_004 = 0.4128HL_8CRE_194:HL_8CRE_194 = 0HL_1N78_001HL_2DER_004HL_5HR6_001HL_5HR7_004HL_6WBR_004HL_1QU2_002HL_1FFY_002HL_3DIL_004HL_8CRE_194Discrepancy0.000.200.400.600.80
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