Motif HL_79462.1 Version HL_79462.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1ZBH_001 | 1ZBH | 0.2294 | 3 | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW | |
| 2 | HL_8UIW_004 | 8UIW | 0.1565 | 3 | N | yjdF RNA (R. gauvreauii) | U | 105 | U | 108 | A | 110 | cWW | |
| 3 | HL_2ZUE_002 | 2ZUE | 0.2134 | 6 | B | tRNA-Arg | C | 931 | A | 937 | G | 939 | cWW | |
| 4 | HL_5T16_002 | 5T16 | 0.1306 | 3 | H | RNA substrate analog | G | 16 | U | 19 | C | 21 | cWW | |
| 5 | HL_4QOZ_001 | 4QOZ | 0.0000 | 3 | A | histone mRNA stem-loop | U | 11 | U | 14 | A | 16 | cWW | |
| 6 | HL_4TUW_002 | 4TUW | 0.1423 | 3 | C | HISTONE MRNA 3' STEM LOOP | U | 13 | U | 16 | A | 18 | cWW | |
| 7 | HL_5WTK_001 | 5WTK | 0.3139 | 8 | B | RNA (58-MER) | C | 7 | A | 15 | G | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUCA | 3 |
| UCCUUA | 1 |
| CCUCCUAAG | 1 |
| GAGUCC | 1 |
| CAAUAUCGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUC | 3 |
| CCUU | 1 |
| CUCCUAA | 1 |
| AGUC | 1 |
| AAUAUCGAA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: