Motif HL_18798.1 Version HL_18798.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1ZBH_001 | 1ZBH | 0.0000 | 3 | Mini UNCG | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW |
| 2 | HL_4HXH_001 | 4HXH | 0.2017 | 3 | A | HISTONE MRNA STEM-LOOP | U | 11 | U | 14 | A | 16 | cWW | |
| 3 | HL_3U5H_004 | 3U5H | 0.7650 | 2 | 5 | 25S rRNA | C | 132 | U | 134 | G | 136 | cWW | |
| 4 | HL_4AQ7_002 | 4AQ7 | 0.9050 | 1 | B | tRNA | G | 47|||A | C | 47|||D | C | 47|||F | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUCA | 2 |
| CUUCG | 1 |
| GCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUC | 2 |
| UUC | 1 |
| CG | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_18798.1 | Only in the parent motif |
|---|---|---|---|
| HL_95423.2 Compare | HL_1ZBH_001, HL_4HXH_001, HL_3U5H_004 | HL_4AQ7_002 | HL_1FJG_018, HL_3U5H_069 |
| HL_82253.1 Compare | HL_4AQ7_002 | HL_1ZBH_001, HL_4HXH_001, HL_3U5H_004 | HL_3OWZ_004, HL_1WZ2_007 |
Children motifs
| Child motif | Common motif instances | Only in HL_18798.1 | Only in the child motif |
|---|---|---|---|
| HL_55718.1 Compare | HL_1ZBH_001, HL_3U5H_004 | HL_4HXH_001, HL_4AQ7_002 | HL_1FJG_018, HL_3U5H_069 |
| HL_17790.1 Compare | HL_4AQ7_002 | HL_1ZBH_001, HL_4HXH_001, HL_3U5H_004 | HL_1WZ2_007 |
- Annotations
-
- (3)
- Mini UNCG (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.20 | Avg 0.56 | Max 1.01
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