Motif HL_83808.2 Version HL_83808.2 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4PRF_001 | 4PRF | 0.3659 | 3 | Pseudoknot | B | Hepatitis Delta virus ribozyme | C | 119 | U | 120 | C | 121 | C | 122 | C | 124 | G | 125 | G | 128 | cWW | ntWW |
| 2 | HL_3NKB_001 | 3NKB | 0.0000 | 2 | Pseudoknot | B | The hepatitis delta virus ribozyme | C | 20 | U | 21 | C | 22 | C | 23 | C | 25 | G | 26 | G | 28 | cWW | tWW |
| 3 | HL_4PR6_001 | 4PR6 | 0.1014 | 3 | Pseudoknot | B | HDV RIBOZYME SELF-CLEAVED | C | 119 | U | 120 | C | 121 | C | 122 | C | 124||A | G | 125 | G | 128 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCCUCGCUG | 2 |
| CUCCUCGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCUCGCU | 2 |
| UCCUCGC | 1 |
- Annotations
-
- Pseudoknot (3)
- Basepair signature
- cWW-tWW-cWW-F-F
- Heat map statistics
- Min 0.10 | Avg 0.19 | Max 0.38
Coloring options: