#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 51-5
1 HL_4Y4O_1394Y4O0.249922AG1492A1494A1495A1496C1498cWW
2 HL_5J7L_1705J7L0.19532Pseudoknot geometry with 3' bulgeDAG1492A1494A1495A1496C1498cWW
3 HL_5TBW_0325TBW0.24782Pseudoknot geometry with 3' bulge1A1506C1508A1509G1510U1512cWW
4 HL_7A0S_0337A0S0.12762Pseudoknot geometry with 3' bulgeXG1337U1339C1340G1341C1343cWW
5 HL_4Y4O_1354Y4O0.079622AG1324U1326C1327G1328C1330cWW
6 HL_4WF9_0334WF90.00002Pseudoknot geometry with 3' bulgeXG1361U1363C1364G1365C1367cWW
7 HL_5J7L_1665J7L0.26042Pseudoknot geometry with 3' bulgeDAG1324U1326A1327A1328C1330cWW
8 HL_4V9F_0354V9F0.19232Pseudoknot geometry with 3' bulge0G1430U1432G1433A1434C1436cWW
9 HL_5VJ9_0035VJ90.49711Pseudoknot geometry with 3' bulgeCG6A7C8G9C11cWW
10 HL_5NDH_0015NDH0.53591Pseudoknot geometry with 3' bulgeAG6A7C8G9C11cWW
11 HL_5NDI_0025NDI0.53511Pseudoknot geometry with 3' bulgeBG8A9C10G11C13cWW
12 HL_4Y4O_1434Y4O0.624712AC1631A1631|||AA1632G1633G1635cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACGAC3
GCAAAUC2
GGUCGUC2
AGCAGUU1
GCUCGUC1
GUUAAUC1
GCUGAUC1
CAAGAG1
Non-Watson-Crick part of the motif
SequenceCounts
ACGA3
CAAAU2
GUCGU2
GCAGU1
CUCGU1
UUAAU1
CUGAU1
AAGA1

Release history

Release3.483.493.503.513.523.53
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry with 3' bulge (9)
  • (3)
  • Basepair signature
    cWW-R-R
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 0.78
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