#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 51-5
1 HL_4Y4O_1394Y4O0.249922A LSU rRNAG1492A1494A1495A1496C1498cWW
2 HL_5J7L_1705J7L0.19532Pseudoknot geometry with 3' bulgeDA LSU rRNAG1492A1494A1495A1496C1498cWW
3 HL_5TBW_0325TBW0.24782Pseudoknot geometry with 3' bulge1 LSU rRNAA1506C1508A1509G1510U1512cWW
4 HL_7A0S_0337A0S0.12762Pseudoknot geometry with 3' bulgeX LSU rRNAG1337U1339C1340G1341C1343cWW
5 HL_4Y4O_1354Y4O0.079622A LSU rRNAG1324U1326C1327G1328C1330cWW
6 HL_4WF9_0334WF90.00002Pseudoknot geometry with 3' bulgeX LSU rRNAG1361U1363C1364G1365C1367cWW
7 HL_5J7L_1665J7L0.26042Pseudoknot geometry with 3' bulgeDA LSU rRNAG1324U1326A1327A1328C1330cWW
8 HL_4V9F_0354V9F0.19232Pseudoknot geometry with 3' bulge0 LSU rRNAG1430U1432G1433A1434C1436cWW
9 HL_5VJ9_0035VJ90.49711Pseudoknot geometry with 3' bulgeCRNA (16-mer)G6A7C8G9C11cWW
10 HL_5NDH_0015NDH0.53591Pseudoknot geometry with 3' bulgeARNA (16-mer)G6A7C8G9C11cWW
11 HL_5NDI_0025NDI0.53511Pseudoknot geometry with 3' bulgeBRNA (20-mer)G8A9C10G11C13cWW
12 HL_4Y4O_1434Y4O0.624712A LSU rRNAC1631A1631|||AA1632G1633G1635cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACGAC3
GCAAAUC2
GGUCGUC2
AGCAGUU1
GCUCGUC1
GUUAAUC1
GCUGAUC1
CAAGAG1
Non-Watson-Crick part of the motif
SequenceCounts
ACGA3
CAAAU2
GUCGU2
GCAGU1
CUCGU1
UUAAU1
CUGAU1
AAGA1

Release history

Release3.483.493.503.513.523.53
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry with 3' bulge (9)
  • (3)
  • Basepair signature
    cWW-R-R
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 0.78
    Help

    Coloring options:

    HL_4Y4O_139:HL_4Y4O_139 = 0HL_4Y4O_139:HL_5J7L_170 = 0.1399HL_4Y4O_139:HL_5TBW_032 = 0.2394HL_4Y4O_139:HL_7A0S_033 = 0.2756HL_4Y4O_139:HL_4Y4O_135 = 0.2629HL_4Y4O_139:HL_4WF9_033 = 0.2499HL_4Y4O_139:HL_5J7L_166 = 0.4315HL_4Y4O_139:HL_4V9F_035 = 0.3543HL_4Y4O_139:HL_5VJ9_003 = 0.5442HL_4Y4O_139:HL_5NDH_001 = 0.5656HL_4Y4O_139:HL_5NDI_002 = 0.5876HL_4Y4O_139:HL_4Y4O_143 = 0.6835HL_5J7L_170:HL_4Y4O_139 = 0.1399HL_5J7L_170:HL_5J7L_170 = 0HL_5J7L_170:HL_5TBW_032 = 0.2076HL_5J7L_170:HL_7A0S_033 = 0.2343HL_5J7L_170:HL_4Y4O_135 = 0.2107HL_5J7L_170:HL_4WF9_033 = 0.1953HL_5J7L_170:HL_5J7L_166 = 0.4003HL_5J7L_170:HL_4V9F_035 = 0.307HL_5J7L_170:HL_5VJ9_003 = 0.5235HL_5J7L_170:HL_5NDH_001 = 0.5469HL_5J7L_170:HL_5NDI_002 = 0.5672HL_5J7L_170:HL_4Y4O_143 = 0.6826HL_5TBW_032:HL_4Y4O_139 = 0.2394HL_5TBW_032:HL_5J7L_170 = 0.2076HL_5TBW_032:HL_5TBW_032 = 0HL_5TBW_032:HL_7A0S_033 = 0.2063HL_5TBW_032:HL_4Y4O_135 = 0.2204HL_5TBW_032:HL_4WF9_033 = 0.2478HL_5TBW_032:HL_5J7L_166 = 0.4016HL_5TBW_032:HL_4V9F_035 = 0.3456HL_5TBW_032:HL_5VJ9_003 = 0.625HL_5TBW_032:HL_5NDH_001 = 0.6591HL_5TBW_032:HL_5NDI_002 = 0.6872HL_5TBW_032:HL_4Y4O_143 = 0.7815HL_7A0S_033:HL_4Y4O_139 = 0.2756HL_7A0S_033:HL_5J7L_170 = 0.2343HL_7A0S_033:HL_5TBW_032 = 0.2063HL_7A0S_033:HL_7A0S_033 = 0HL_7A0S_033:HL_4Y4O_135 = 0.0708HL_7A0S_033:HL_4WF9_033 = 0.1276HL_7A0S_033:HL_5J7L_166 = 0.2838HL_7A0S_033:HL_4V9F_035 = 0.268HL_7A0S_033:HL_5VJ9_003 = 0.5841HL_7A0S_033:HL_5NDH_001 = 0.621HL_7A0S_033:HL_5NDI_002 = 0.6245HL_7A0S_033:HL_4Y4O_143 = 0.7236HL_4Y4O_135:HL_4Y4O_139 = 0.2629HL_4Y4O_135:HL_5J7L_170 = 0.2107HL_4Y4O_135:HL_5TBW_032 = 0.2204HL_4Y4O_135:HL_7A0S_033 = 0.0708HL_4Y4O_135:HL_4Y4O_135 = 0HL_4Y4O_135:HL_4WF9_033 = 0.0796HL_4Y4O_135:HL_5J7L_166 = 0.2773HL_4Y4O_135:HL_4V9F_035 = 0.2371HL_4Y4O_135:HL_5VJ9_003 = 0.543HL_4Y4O_135:HL_5NDH_001 = 0.5804HL_4Y4O_135:HL_5NDI_002 = 0.5817HL_4Y4O_135:HL_4Y4O_143 = 0.6772HL_4WF9_033:HL_4Y4O_139 = 0.2499HL_4WF9_033:HL_5J7L_170 = 0.1953HL_4WF9_033:HL_5TBW_032 = 0.2478HL_4WF9_033:HL_7A0S_033 = 0.1276HL_4WF9_033:HL_4Y4O_135 = 0.0796HL_4WF9_033:HL_4WF9_033 = 0HL_4WF9_033:HL_5J7L_166 = 0.2604HL_4WF9_033:HL_4V9F_035 = 0.1923HL_4WF9_033:HL_5VJ9_003 = 0.4971HL_4WF9_033:HL_5NDH_001 = 0.5359HL_4WF9_033:HL_5NDI_002 = 0.5351HL_4WF9_033:HL_4Y4O_143 = 0.6247HL_5J7L_166:HL_4Y4O_139 = 0.4315HL_5J7L_166:HL_5J7L_170 = 0.4003HL_5J7L_166:HL_5TBW_032 = 0.4016HL_5J7L_166:HL_7A0S_033 = 0.2838HL_5J7L_166:HL_4Y4O_135 = 0.2773HL_5J7L_166:HL_4WF9_033 = 0.2604HL_5J7L_166:HL_5J7L_166 = 0HL_5J7L_166:HL_4V9F_035 = 0.2101HL_5J7L_166:HL_5VJ9_003 = 0.6056HL_5J7L_166:HL_5NDH_001 = 0.6705HL_5J7L_166:HL_5NDI_002 = 0.6368HL_5J7L_166:HL_4Y4O_143 = 0.648HL_4V9F_035:HL_4Y4O_139 = 0.3543HL_4V9F_035:HL_5J7L_170 = 0.307HL_4V9F_035:HL_5TBW_032 = 0.3456HL_4V9F_035:HL_7A0S_033 = 0.268HL_4V9F_035:HL_4Y4O_135 = 0.2371HL_4V9F_035:HL_4WF9_033 = 0.1923HL_4V9F_035:HL_5J7L_166 = 0.2101HL_4V9F_035:HL_4V9F_035 = 0HL_4V9F_035:HL_5VJ9_003 = 0.4443HL_4V9F_035:HL_5NDH_001 = 0.5114HL_4V9F_035:HL_5NDI_002 = 0.4976HL_4V9F_035:HL_4Y4O_143 = 0.5721HL_5VJ9_003:HL_4Y4O_139 = 0.5442HL_5VJ9_003:HL_5J7L_170 = 0.5235HL_5VJ9_003:HL_5TBW_032 = 0.625HL_5VJ9_003:HL_7A0S_033 = 0.5841HL_5VJ9_003:HL_4Y4O_135 = 0.543HL_5VJ9_003:HL_4WF9_033 = 0.4971HL_5VJ9_003:HL_5J7L_166 = 0.6056HL_5VJ9_003:HL_4V9F_035 = 0.4443HL_5VJ9_003:HL_5VJ9_003 = 0HL_5VJ9_003:HL_5NDH_001 = 0.1088HL_5VJ9_003:HL_5NDI_002 = 0.1215HL_5VJ9_003:HL_4Y4O_143 = 0.4189HL_5NDH_001:HL_4Y4O_139 = 0.5656HL_5NDH_001:HL_5J7L_170 = 0.5469HL_5NDH_001:HL_5TBW_032 = 0.6591HL_5NDH_001:HL_7A0S_033 = 0.621HL_5NDH_001:HL_4Y4O_135 = 0.5804HL_5NDH_001:HL_4WF9_033 = 0.5359HL_5NDH_001:HL_5J7L_166 = 0.6705HL_5NDH_001:HL_4V9F_035 = 0.5114HL_5NDH_001:HL_5VJ9_003 = 0.1088HL_5NDH_001:HL_5NDH_001 = 0HL_5NDH_001:HL_5NDI_002 = 0.1226HL_5NDH_001:HL_4Y4O_143 = 0.4648HL_5NDI_002:HL_4Y4O_139 = 0.5876HL_5NDI_002:HL_5J7L_170 = 0.5672HL_5NDI_002:HL_5TBW_032 = 0.6872HL_5NDI_002:HL_7A0S_033 = 0.6245HL_5NDI_002:HL_4Y4O_135 = 0.5817HL_5NDI_002:HL_4WF9_033 = 0.5351HL_5NDI_002:HL_5J7L_166 = 0.6368HL_5NDI_002:HL_4V9F_035 = 0.4976HL_5NDI_002:HL_5VJ9_003 = 0.1215HL_5NDI_002:HL_5NDH_001 = 0.1226HL_5NDI_002:HL_5NDI_002 = 0HL_5NDI_002:HL_4Y4O_143 = 0.4008HL_4Y4O_143:HL_4Y4O_139 = 0.6835HL_4Y4O_143:HL_5J7L_170 = 0.6826HL_4Y4O_143:HL_5TBW_032 = 0.7815HL_4Y4O_143:HL_7A0S_033 = 0.7236HL_4Y4O_143:HL_4Y4O_135 = 0.6772HL_4Y4O_143:HL_4WF9_033 = 0.6247HL_4Y4O_143:HL_5J7L_166 = 0.648HL_4Y4O_143:HL_4V9F_035 = 0.5721HL_4Y4O_143:HL_5VJ9_003 = 0.4189HL_4Y4O_143:HL_5NDH_001 = 0.4648HL_4Y4O_143:HL_5NDI_002 = 0.4008HL_4Y4O_143:HL_4Y4O_143 = 0HL_4Y4O_139HL_5J7L_170HL_5TBW_032HL_7A0S_033HL_4Y4O_135HL_4WF9_033HL_5J7L_166HL_4V9F_035HL_5VJ9_003HL_5NDH_001HL_5NDI_002HL_4Y4O_143Discrepancy0.000.200.400.60
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