#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 61-62-5
1 HL_3EPH_0013EPH0.36953tRNA D-loopE tRNAC13A14G15U16A21G22cWWcWS
2 HL_3TUP_0013TUP0.36604tRNA D-loopT tRNAC13A14G15U16A21G22cWWncWS
3 HL_3FOZ_0043FOZ0.35794tRNA D-loopD tRNAC13A14G15U16A21G22cWWcWS
4 HL_5WWT_0015WWT0.00003tRNA D-loopC tRNAC13A14G15G16A21G22cWW
5 HL_1GAX_0041GAX0.37253tRNA D-loopD tRNAC913A914G915C916A920G921cWW
6 HL_3AMU_0013AMU0.69316tRNA D-loopB tRNAU13A14G15C16A21|||CG22cWWncWS

3D structures

Complete motif including flanking bases
SequenceCounts
CAGUGGUAG1
CAGUUGGUAG1
CAGUCGGUAG1
CAGGGGUAG1
CAGCGGAAG1
UAGCCAGGUCAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGUGGUA1
AGUUGGUA1
AGUCGGUA1
AGGGGUA1
AGCGGAA1
AGCCAGGUCA1

Release history

Release3.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (6)
  • Basepair signature
    cWW-cWS-R-R
    Heat map statistics
    Min 0.14 | Avg 0.43 | Max 0.90
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