Motif HL_88526.1 Version HL_88526.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_057 | 4WF9 | 0.2254 | 1 | X | LSU rRNA | U | 2555 | U | 2557 | A | 2558 | G | 2559 | U | 2560 | C | 2561 | G | 2562 | cWW | ||
| 2 | HL_5J7L_194 | 5J7L | 0.2102 | 1 | DA | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | ||
| 3 | HL_7RQB_061 | 7RQB | 0.1602 | 1 | 1A | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW | ||
| 4 | HL_4V9F_063 | 4V9F | 0.2180 | 1 | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | ||
| 5 | HL_7A0S_060 | 7A0S | 0.1687 | 1 | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW | ||
| 6 | HL_5TBW_062 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | ||
| 7 | HL_6JXM_002 | 6JXM | 0.3566 | 1 | B | tRNA | G | 41 | C | 42 | A | 44 | A | 45 | A | 46 | A | 47 | C | 48 | cWW | ||
| 8 | HL_8H1B_001 | 8H1B | 0.7807 | 2 | C | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB | |
| 9 | HL_1N78_002 | 1N78 | 0.8004 | 2 | tRNA anticodon loop | C | tRNA(Glu) | C | 531 | C | 532 | U | 535 | C | 536 | A | 537 | A | 538 | G | 539 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGAAG | 2 |
| UGUAGUCG | 1 |
| UGAAGUAG | 1 |
| UGCAGAAG | 1 |
| AGCAGAAU | 1 |
| GCUAAAAC | 1 |
| ACUUUGACU | 1 |
| CCUCUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAA | 2 |
| GCAGAA | 2 |
| GUAGUC | 1 |
| GAAGUA | 1 |
| CUAAAA | 1 |
| CUUUGAC | 1 |
| CUCUCAA | 1 |
- Annotations
-
- tRNA anticodon loop (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.35 | Max 0.80
Coloring options: