Motif HL_91058.2 Version HL_91058.2 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_6WBR_002 | 6WBR | 0.7121 | 3 | B | RNA (94-MER) | C | 56 | U | 57 | G | 60 | G | 62 | ||
2 | HL_4UYK_003 | 4UYK | 0.5888 | 2 | R | SRP RNA | U | 98 | G | 99 | A | 101 | G | 103 | cWW | ntSW |
3 | HL_3SIU_002 | 3SIU | 0.5975 | 3 | F | U4atac snRNA | C | 40 | G | 41 | U | 44 | G | 46 | cWW | |
4 | HL_4V88_190 | 4V88 | 0.3073 | 2 | A6 | SSU rRNA | C | 230 | U | 231 | G | 234 | G | 235 | ncWW | |
5 | HL_8S95_003 | 8S95 | 0.0000 | 3 | C | Lysine tRNA scaffold,Poliovirus cloverleaf RNA | C | 67 | C | 68 | G | 71 | G | 73 | cWW | ncWH |
6 | HL_6VMY_004 | 6VMY | 0.2046 | 3 | A | Cobalamin riboswitch | C | 287 | C | 288 | G | 291 | G | 293 | cWW | ncWH |
7 | HL_5WTI_001 | 5WTI | 0.3412 | 3 | B | RNA (123-MER) | C | 12 | U | 13 | U | 16 | G | 18 | cWW | cWH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUUCGUG | 1 |
UGUAAG | 1 |
CGCAUAG | 1 |
CUUCGG | 1 |
CCACGUG | 1 |
CCAAGCG | 1 |
CUUUUGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUCGU | 1 |
GUAA | 1 |
GCAUA | 1 |
UUCG | 1 |
CACGU | 1 |
CAAGC | 1 |
UUUUG | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: