HL_91122.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6
1	HL_2JLT_002	2JLT	0.4028	2	Pseudoknot geometry	B	TAR	C	5	G	8	G	9	G	10	A	11	G	12	cWW
2	HL_2NZ4_011	2NZ4	0.2536	3		R	glmS ribozyme	G	71	A	75	U	76	C	77	A	78	C	79	cWW
3	HL_3O58_061	3O58	0.2526	3		1	LSU rRNA	C	2776	A	2780	U	2781	U	2782	U	2783	G	2784	cWW
4	HL_2ZJR_054	2ZJR	0.2638	2	Pseudoknot geometry (H)	X	LSU rRNA	C	2303	A	2306	A	2307	A	2308	G	2309	G	2310	cWW
5	HL_2QBG_058	2QBG	0.2031	2		B	LSU rRNA	U	2324	A	2327	A	2328	U	2329	G	2330	G	2331	cWW
6	HL_2NR0_003	2NR0	0.1927	0		E	tRNA	C	45\|\|\|D	A	45\|\|\|E	A	45\|\|\|F	U	45\|\|\|G	A	45\|\|\|H	G	46\|\|\|I	cWW
7	HL_3OWZ_002	3OWZ	0.2688	0		A	Glycine riboswitch	G	49	G	50	A	51	A	52	A	53	C	54	cWW
8	HL_3O58_067	3O58	0.1055	0		1	LSU rRNA	U	3068	G	3069	A	3070	U	3071	C	3072	A	3073	cWW
9	HL_2NZ4_015	2NZ4	0.0000	3		S	glmS ribozyme	G	71	A	75	U	76	C	77	A	78	C	79	cWW
10	HL_2NZ4_007	2NZ4	0.2880	3	Pseudoknot geometry	Q	glmS ribozyme	G	71	A	75	U	76	C	77	A	78	C	79	cWW
11	HL_3O58_009	3O58	0.3537	4		1	LSU rRNA	G	303	A	308	U	309	U	310	C	311	C	312	cWW
12	HL_2NZ4_003	2NZ4	0.2727	3		P	glmS ribozyme	G	71	A	75	U	76	C	77	A	78	C	79	cWW
13	HL_3PYO_056	3PYO	0.2505	2		A	LSU rRNA	C	2324	A	2327	A	2328	G	2329	G	2330	G	2331	cWW
14	HL_3O58_058	3O58	0.3105	2		1	LSU rRNA	C	2693	A	2696	A	2697	G	2698	G	2699	G	2700	cWW
15	HL_1S72_061	1S72	0.4004	3	Pseudoknot geometry (H)	0	LSU rRNA	G	2442	G	2446	A	2447	U	2448	G	2449	C	2450	cWW
16	HL_2QBG_067	2QBG	0.4160	0		B	LSU rRNA	U	2701	G	2702	C	2703	C	2704	A	2705	A	2706	cWW
17	HL_3NPB_001	3NPB	0.5797	1		A	SAM-I riboswitch	G	23	C	25	U	26	G	27	G	28	C	29	cWW
18	HL_1S72_067	1S72	0.5549	0	Ribsomal LSU H95 (H)	0	LSU rRNA	C	2737	G	2738	A	2739	G	2740	A	2741	G	2742	cWW
19	HL_2GIS_001	2GIS	0.5785	1		A	SAM-I riboswitch	G	23	C	25	U	26	G	27	G	28	C	29	cWW
20	HL_1S72_058	1S72	0.4413	2	Pseudoknot geometry (H)	0	LSU rRNA	U	2358	A	2361	A	2362	G	2363	A	2364	G	2365	cWW
21	HL_2ZJR_063	2ZJR	0.5720	0	Ribsomal LSU H95 (H)	X	LSU rRNA	U	2680	A	2681	C	2682	C	2683	A	2684	A	2685	cWW
22	HL_3G78_005	3G78	0.4487	4		A	Group II catalytic intron D1-D4-3	U	178	A	183	A	184	C	185	A	186	A	187	cWW
23	HL_3IVK_004	3IVK	0.5989	2	Pseudoknot geometry	M	class I ligase product	G	75	G	78	C	79	A	80	G	81	C	82	cWW
24	HL_3IVK_009	3IVK	0.7562	2		C	class I ligase product	G	75	G	78	C	79	A	80	G	81	C	82	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCAUCAC	4
GACUGGC	2
GUGGCAGC	2
CCUGGGAG	1
CGGAAUUUG	1
CGCAAAGG	1
UGCAAUGG	1
CAAUAG	1
GGAAAC	1
UGAUCA	1
GGUAAAUUCC	1
CGCAAGGG	1
CAAAAGGG	1
GCUUGAUGC	1
UGCCAA	1
CGAGAG	1
UGCAAGAG	1
UACCAA	1
UGCAUAACAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCAUCA	4
ACUGG	2
UGGCAG	2
CUGGGA	1
GGAAUUU	1
GCAAAG	1
GCAAUG	1
AAUA	1
GAAA	1
GAUC	1
GUAAAUUC	1
GCAAGG	1
AAAAGG	1
CUUGAUG	1
GCCA	1
GAGA	1
GCAAGA	1
ACCA	1
GCAUAACA	1

Release history

Release	0.1	0.2
Date	2011-12-08	2011-12-08
Status	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motif	Common motif instances	Only in HL_91122.1	Only in the child motif
HL_91226.1 Compare	HL_1S72_061, HL_1S72_058, HL_2ZJR_054, HL_2NZ4_015, HL_2JLT_002, HL_2NZ4_011, HL_3G78_005, HL_2QBG_058	HL_2NR0_003, HL_3O58_067, HL_3OWZ_002, HL_3O58_058, HL_2NZ4_007, HL_2GIS_001, HL_3O58_061, HL_2NZ4_003, HL_3PYO_056, HL_2ZJR_063, HL_1S72_067, HL_3IVK_009, HL_2QBG_067, HL_3NPB_001, HL_3O58_009, HL_3IVK_004	HL_4ENB_001, HL_4A1B_057, HL_3U5H_061, HL_3V2F_054, HL_4A1B_060, HL_3U5H_058, HL_1S72_014
HL_28436.1 Compare	HL_2NR0_003, HL_2ZJR_063, HL_2QBG_067, HL_3OWZ_002, HL_1S72_067	HL_3O58_067, HL_1S72_061, HL_1S72_058, HL_2ZJR_054, HL_3O58_058, HL_2NZ4_007, HL_2NZ4_015, HL_2JLT_002, HL_2NZ4_003, HL_2NZ4_011, HL_3PYO_056, HL_3IVK_009, HL_3O58_061, HL_2GIS_001, HL_2QBG_058, HL_3O58_009, HL_3IVK_004, HL_3G78_005, HL_3NPB_001	HL_2ZJR_037, HL_1U6B_002, HL_3U5H_067, HL_4A1B_066
HL_17723.1 Compare	HL_3NPB_001, HL_3IVK_009	HL_3O58_058, HL_2NZ4_015, HL_2JLT_002, HL_2NZ4_011, HL_2NR0_003, HL_1S72_058, HL_2ZJR_054, HL_2GIS_001, HL_2QBG_058, HL_3IVK_004, HL_3O58_067, HL_3OWZ_002, HL_3O58_061, HL_2NZ4_007, HL_2NZ4_003, HL_3G78_005, HL_3O58_009, HL_2ZJR_063, HL_1S72_061, HL_3PYO_056, HL_1S72_067, HL_2QBG_067	HL_1WZ2_006, HL_2QBG_015, HL_4AOB_001, HL_3V7E_004, HL_3GX5_001, HL_2ZJR_013, HL_3V2F_014

Motif HL_91122.1 Version HL_91122.1 of this group appears in releases 0.1 to 0.2 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_91122.1 Version HL_91122.1 of this group appears in releases 0.1 to 0.2

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Csv

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