Motif HL_91620.1 Version HL_91620.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_212 | 8P9A | 0.7196 | 3 | sR | SSU rRNA | U | 1055 | U | 1056 | U | 1057 | A | 1061 | A | 1062 | U | 1063 | G | 1064 | cWW | ncwW | ntWW | |
| 2 | HL_7A0S_029 | 7A0S | 0.4639 | 1 | GNRA related | X | LSU rRNA | C | 1103 | G | 1104 | U | 1105 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH | |
| 3 | HL_9E6Q_047 | 9E6Q | 0.1349 | 1 | GNRA related (H) | 1 | LSU rRNA | G | 1996 | G | 1997 | U | 1998 | C | 2000 | A | 2001 | A | 2002 | C | 2003 | cWW | ||
| 4 | HL_4V9F_049 | 4V9F | 0.0000 | 1 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH | |
| 5 | HL_2D6F_005 | 2D6F | 0.4266 | 2 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW | |
| 6 | HL_6GYV_003 | 6GYV | 0.5211 | 1 | A | Lariat-capping ribozyme | G | 103 | G | 104 | C | 106 | G | 107 | A | 108 | U | 109 | C | 110 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUUUAAUG | 1 |
| CGUAAUAG | 1 |
| GGUACAAC | 1 |
| CGUACAAG | 1 |
| GCUUUGGAC | 1 |
| GGACGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUACAA | 2 |
| UUUUUAAU | 1 |
| GUAAUA | 1 |
| CUUUGGA | 1 |
| GACGAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA related (2)
- (2)
- tRNA anticodon loop (1)
- GNRA related (H) (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.50 | Max 0.97
Coloring options: