Motif HL_91680.1 Version HL_91680.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | 3-4 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5KK5_001 | 5KK5 | 0.7191 | 2 | B | RNA (40-MER) | C | -11 | U | -10 | U | -8 | G | -6 | cWW | ncWS | ||
2 | HL_3DH3_003 | 3DH3 | 0.1610 | 2 | F | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | A | 2598 | G | 2599 | cWW | tSW | ||
3 | HL_3DH3_001 | 3DH3 | 0.0000 | 2 | E | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | A | 2598 | G | 2599 | cWW | tSW | ||
4 | HL_4U7U_001 | 4U7U | 0.3064 | 2 | UNCG | L | crRNA | C | 51 | G | 52 | A | 55 | G | 56 | cWW | tSW | |
5 | HL_7A0S_019 | 7A0S | 0.4810 | 2 | X | LSU rRNA | U | 622 | G | 623 | A | 626 | A | 627 | cWW | ntsS | ||
6 | HL_8VTW_018 | 8VTW | 0.5114 | 3 | 1A | LSU rRNA | C | 612 | G | 613 | A | 614|||C | G | 615 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGUGAG | 2 |
CUCUUG | 1 |
CGCCAG | 1 |
UGAAAA | 1 |
CGUUGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUGA | 2 |
UCUU | 1 |
GCCA | 1 |
GAAA | 1 |
GUUGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- UNCG (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.16 | Avg 0.42 | Max 0.74
Coloring options: