RNA 3D Hub //

Motif HL_91948.1 Version HL_91948.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_5SWD_0055SWD0.12913Mini UNCGBPurine riboswitchU47C50A52cWW
2 HL_3SN2_0013SN20.08952Btransferrin receptor iron regulatory element B RNAC14U17G18cWW
3 HL_4V9F_0414V9F0.15242Mini UNCG0 LSU rRNAC1651U1654G1655cWW
4 HL_6LTU_0016LTU0.11502BRNA (56-mer)U12C15A16cWW
5 HL_7D3J_0017D3J0.09242BRNA (43-MER)C12C15G16cWW
6 HL_7EU9_0017EU90.10472BRNA (43-MER)C12C15G16cWW
7 HL_3SNP_0023SNP0.00002Dferritin H IRE RNAC14U17G18cWW
8 HL_5AH5_0075AH50.28072Mini UNCGD tRNAC46|||AC46|||CG46|||EcWW
9 HL_4V9F_0214V9F0.23982Mini UNCG0 LSU rRNAC712U714G716cWW
10 HL_5TBW_0685TBW0.254211 LSU rRNAC3194U3196G3197cWW
11 HL_5J7L_1765J7L0.31401DA LSU rRNAC1728C1730G1731ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAGUG2
CAUCG2
UUUCUA1
CCAUG1
UUUCA1
CUCUG1
CUUUG1
CUUG1
CUCG1
Non-Watson-Crick part of the motif
SequenceCounts
AGU2
AUC2
UUCU1
CAU1
UUC1
UCU1
UUU1
UU1
UC1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Mini UNCG (4)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.07 | Avg 0.21 | Max 0.95
    Help

    Coloring options:

    HL_5SWD_005:HL_5SWD_005 = 0HL_5SWD_005:HL_3SN2_001 = 0.1148HL_5SWD_005:HL_4V9F_041 = 0.1772HL_5SWD_005:HL_6LTU_001 = 0.1283HL_5SWD_005:HL_7D3J_001 = 0.1294HL_5SWD_005:HL_7EU9_001 = 0.1507HL_5SWD_005:HL_3SNP_002 = 0.1291HL_5SWD_005:HL_5AH5_007 = 0.3689HL_5SWD_005:HL_4V9F_021 = 0.2793HL_5SWD_005:HL_5TBW_068 = 0.2679HL_5SWD_005:HL_5J7L_176 = 0.3262HL_3SN2_001:HL_5SWD_005 = 0.1148HL_3SN2_001:HL_3SN2_001 = 0HL_3SN2_001:HL_4V9F_041 = 0.0985HL_3SN2_001:HL_6LTU_001 = 0.0819HL_3SN2_001:HL_7D3J_001 = 0.0762HL_3SN2_001:HL_7EU9_001 = 0.102HL_3SN2_001:HL_3SNP_002 = 0.0895HL_3SN2_001:HL_5AH5_007 = 0.2956HL_3SN2_001:HL_4V9F_021 = 0.2375HL_3SN2_001:HL_5TBW_068 = 0.2628HL_3SN2_001:HL_5J7L_176 = 0.3221HL_4V9F_041:HL_5SWD_005 = 0.1772HL_4V9F_041:HL_3SN2_001 = 0.0985HL_4V9F_041:HL_4V9F_041 = 0HL_4V9F_041:HL_6LTU_001 = 0.1028HL_4V9F_041:HL_7D3J_001 = 0.104HL_4V9F_041:HL_7EU9_001 = 0.1324HL_4V9F_041:HL_3SNP_002 = 0.1524HL_4V9F_041:HL_5AH5_007 = 0.3333HL_4V9F_041:HL_4V9F_021 = 0.2858HL_4V9F_041:HL_5TBW_068 = 0.3126HL_4V9F_041:HL_5J7L_176 = 0.3593HL_6LTU_001:HL_5SWD_005 = 0.1283HL_6LTU_001:HL_3SN2_001 = 0.0819HL_6LTU_001:HL_4V9F_041 = 0.1028HL_6LTU_001:HL_6LTU_001 = 0HL_6LTU_001:HL_7D3J_001 = 0.075HL_6LTU_001:HL_7EU9_001 = 0.1279HL_6LTU_001:HL_3SNP_002 = 0.115HL_6LTU_001:HL_5AH5_007 = 0.3155HL_6LTU_001:HL_4V9F_021 = 0.2642HL_6LTU_001:HL_5TBW_068 = 0.2752HL_6LTU_001:HL_5J7L_176 = 0.945HL_7D3J_001:HL_5SWD_005 = 0.1294HL_7D3J_001:HL_3SN2_001 = 0.0762HL_7D3J_001:HL_4V9F_041 = 0.104HL_7D3J_001:HL_6LTU_001 = 0.075HL_7D3J_001:HL_7D3J_001 = 0HL_7D3J_001:HL_7EU9_001 = 0.0677HL_7D3J_001:HL_3SNP_002 = 0.0924HL_7D3J_001:HL_5AH5_007 = 0.3164HL_7D3J_001:HL_4V9F_021 = 0.2797HL_7D3J_001:HL_5TBW_068 = 0.2876HL_7D3J_001:HL_5J7L_176 = 0.3317HL_7EU9_001:HL_5SWD_005 = 0.1507HL_7EU9_001:HL_3SN2_001 = 0.102HL_7EU9_001:HL_4V9F_041 = 0.1324HL_7EU9_001:HL_6LTU_001 = 0.1279HL_7EU9_001:HL_7D3J_001 = 0.0677HL_7EU9_001:HL_7EU9_001 = 0HL_7EU9_001:HL_3SNP_002 = 0.1047HL_7EU9_001:HL_5AH5_007 = 0.3245HL_7EU9_001:HL_4V9F_021 = 0.2865HL_7EU9_001:HL_5TBW_068 = 0.3126HL_7EU9_001:HL_5J7L_176 = 0.3438HL_3SNP_002:HL_5SWD_005 = 0.1291HL_3SNP_002:HL_3SN2_001 = 0.0895HL_3SNP_002:HL_4V9F_041 = 0.1524HL_3SNP_002:HL_6LTU_001 = 0.115HL_3SNP_002:HL_7D3J_001 = 0.0924HL_3SNP_002:HL_7EU9_001 = 0.1047HL_3SNP_002:HL_3SNP_002 = 0HL_3SNP_002:HL_5AH5_007 = 0.2807HL_3SNP_002:HL_4V9F_021 = 0.2398HL_3SNP_002:HL_5TBW_068 = 0.2542HL_3SNP_002:HL_5J7L_176 = 0.314HL_5AH5_007:HL_5SWD_005 = 0.3689HL_5AH5_007:HL_3SN2_001 = 0.2956HL_5AH5_007:HL_4V9F_041 = 0.3333HL_5AH5_007:HL_6LTU_001 = 0.3155HL_5AH5_007:HL_7D3J_001 = 0.3164HL_5AH5_007:HL_7EU9_001 = 0.3245HL_5AH5_007:HL_3SNP_002 = 0.2807HL_5AH5_007:HL_5AH5_007 = 0HL_5AH5_007:HL_4V9F_021 = 0.1788HL_5AH5_007:HL_5TBW_068 = 0.2347HL_5AH5_007:HL_5J7L_176 = 0.2929HL_4V9F_021:HL_5SWD_005 = 0.2793HL_4V9F_021:HL_3SN2_001 = 0.2375HL_4V9F_021:HL_4V9F_041 = 0.2858HL_4V9F_021:HL_6LTU_001 = 0.2642HL_4V9F_021:HL_7D3J_001 = 0.2797HL_4V9F_021:HL_7EU9_001 = 0.2865HL_4V9F_021:HL_3SNP_002 = 0.2398HL_4V9F_021:HL_5AH5_007 = 0.1788HL_4V9F_021:HL_4V9F_021 = 0HL_4V9F_021:HL_5TBW_068 = 0.1778HL_4V9F_021:HL_5J7L_176 = 0.2619HL_5TBW_068:HL_5SWD_005 = 0.2679HL_5TBW_068:HL_3SN2_001 = 0.2628HL_5TBW_068:HL_4V9F_041 = 0.3126HL_5TBW_068:HL_6LTU_001 = 0.2752HL_5TBW_068:HL_7D3J_001 = 0.2876HL_5TBW_068:HL_7EU9_001 = 0.3126HL_5TBW_068:HL_3SNP_002 = 0.2542HL_5TBW_068:HL_5AH5_007 = 0.2347HL_5TBW_068:HL_4V9F_021 = 0.1778HL_5TBW_068:HL_5TBW_068 = 0HL_5TBW_068:HL_5J7L_176 = 0.1796HL_5J7L_176:HL_5SWD_005 = 0.3262HL_5J7L_176:HL_3SN2_001 = 0.3221HL_5J7L_176:HL_4V9F_041 = 0.3593HL_5J7L_176:HL_6LTU_001 = 0.945HL_5J7L_176:HL_7D3J_001 = 0.3317HL_5J7L_176:HL_7EU9_001 = 0.3438HL_5J7L_176:HL_3SNP_002 = 0.314HL_5J7L_176:HL_5AH5_007 = 0.2929HL_5J7L_176:HL_4V9F_021 = 0.2619HL_5J7L_176:HL_5TBW_068 = 0.1796HL_5J7L_176:HL_5J7L_176 = 0HL_5SWD_005HL_3SN2_001HL_4V9F_041HL_6LTU_001HL_7D3J_001HL_7EU9_001HL_3SNP_002HL_5AH5_007HL_4V9F_021HL_5TBW_068HL_5J7L_176Discrepancy0.000.200.400.600.80
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