Motif HL_91948.1 Version HL_91948.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5SWD_005 | 5SWD | 0.1291 | 3 | Mini UNCG | B | Purine riboswitch | U | 47 | C | 50 | A | 52 | cWW |
| 2 | HL_3SN2_001 | 3SN2 | 0.0895 | 2 | B | IRE II | C | 14 | U | 17 | G | 18 | cWW | |
| 3 | HL_4V9F_041 | 4V9F | 0.1524 | 2 | Mini UNCG | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW |
| 4 | HL_6LTU_001 | 6LTU | 0.1150 | 2 | B | RNA (56-mer) | U | 12 | C | 15 | A | 16 | cWW | |
| 5 | HL_7D3J_001 | 7D3J | 0.0924 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 6 | HL_7EU9_001 | 7EU9 | 0.1047 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 7 | HL_3SNP_002 | 3SNP | 0.0000 | 2 | D | IRE | C | 14 | U | 17 | G | 18 | cWW | |
| 8 | HL_5AH5_007 | 5AH5 | 0.2807 | 2 | Mini UNCG | D | tRNA | C | 46|||A | C | 46|||C | G | 46|||E | cWW |
| 9 | HL_4V9F_021 | 4V9F | 0.2398 | 2 | Mini UNCG | 0 | LSU rRNA | C | 712 | U | 714 | G | 716 | cWW |
| 10 | HL_5TBW_068 | 5TBW | 0.2542 | 1 | 1 | LSU rRNA | C | 3194 | U | 3196 | G | 3197 | cWW | |
| 11 | HL_5J7L_176 | 5J7L | 0.3140 | 1 | DA | LSU rRNA | C | 1728 | C | 1730 | G | 1731 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUG | 2 |
| CAUCG | 2 |
| UUUCUA | 1 |
| CCAUG | 1 |
| UUUCA | 1 |
| CUCUG | 1 |
| CUUUG | 1 |
| CUUG | 1 |
| CUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU | 2 |
| AUC | 2 |
| UUCU | 1 |
| CAU | 1 |
| UUC | 1 |
| UCU | 1 |
| UUU | 1 |
| UU | 1 |
| UC | 1 |
- Annotations
-
- (7)
- Mini UNCG (4)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.07 | Avg 0.21 | Max 0.95
Coloring options: