Motif HL_95727.1 Version HL_95727.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1OOA_001 | 1OOA | 0.1068 | 1 | C | RNA aptamer | U | 13 | G | 14 | U | 15 | A | 17 | G | 18 | cWW | ntSH |
| 2 | HL_2QUX_006 | 2QUX | 0.0853 | 3 | R | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 3 | HL_2QUX_001 | 2QUX | 0.0793 | 3 | C | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 4 | HL_2QUX_002 | 2QUX | 0.0000 | 3 | F | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 5 | HL_2QUX_005 | 2QUX | 0.0734 | 3 | O | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 6 | HL_2QUX_003 | 2QUX | 0.1130 | 3 | I | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW | |
| 7 | HL_2QUX_004 | 2QUX | 0.7575 | 3 | L | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAUGGC | 6 |
| UGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAUGG | 6 |
| GUAA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_95727.1 | Only in the child motif |
|---|---|---|---|
| HL_95727.2 Compare | HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_2QUX_002 | HL_1OOA_001 | HL_2AW7_023, HL_3O30_010 |
| HL_57387.1 Compare | HL_1OOA_001 | HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_2QUX_002 | HL_3O58_008, HL_2QBG_032, HL_1OOA_002 |
Coloring options: