Motif HL_98523.1 Version HL_98523.1 of this group appears in releases 0.3 to 1.4

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_1U9S_001	1U9S	0.3543	1	GNRA	A	RIBONUCLEASE P	G	84	U	85	A	86	A	87	C	88	C	90	cWW
2	HL_3Q1Q_002	3Q1Q	0.0000	1		B	RNase P RNA	G	77	U	78	A	79	A	80	C	81	C	83	cWW
3	HL_3P49_002	3P49	0.3201	1		A	Glycine riboswitch	G	41	U	42	A	43	A	44	A	45	C	47	cWW	tWH
4	HL_2XZM_003	2XZM	0.8206	1		A	18S RRNA	C	148	U	149	A	150	A	151	U	152	G	154	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAACGC	2
GUAAAUC	1
CUAAUUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAACG	2
UAAAU	1
UAAUU	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0	1.1	1.2	1.3	1.4
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-06	2013-05-04	2013-06-01	2013-07-03
Status	> 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_98523.1	Only in the parent motif
HL_08706.1 Compare	HL_1U9S_001, HL_2XZM_003	HL_3Q1Q_002, HL_3P49_002
HL_47025.1 Compare	HL_3Q1Q_002	HL_3P49_002, HL_1U9S_001, HL_2XZM_003	HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3O30_003, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_025, HL_3O58_002, HL_2ZJR_004, HL_1S72_022, HL_1S72_045, HL_3AM1_002, HL_2AW7_013
HL_77557.1 Compare	HL_3P49_002	HL_3Q1Q_002, HL_1U9S_001, HL_2XZM_003	HL_2ZJR_035

Children motifs

Child motif	Common motif instances	Only in HL_98523.1	Only in the child motif
HL_98523.2 Compare	HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001	HL_2XZM_003	HL_4BPP_003

Annotations: (3)
GNRA (1)
Basepair signature: cWW-R-R-R
Heat map statistics: Min 0.32 | Avg 0.48 | Max 0.91

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Coloring options: Nucleotide numbers

Motif HL_98523.1 Version HL_98523.1 of this group appears in releases 0.3 to 1.4 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_98523.1 Version HL_98523.1 of this group appears in releases 0.3 to 1.4

Download

Csv

Json