Motif HL_98523.1 Version HL_98523.1 of this group appears in releases 0.3 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1U9S_001 | 1U9S | 0.3543 | 1 | GNRA | A | RNase P class A | G | 84 | U | 85 | A | 86 | A | 87 | C | 88 | C | 90 | cWW | |
| 2 | HL_3Q1Q_002 | 3Q1Q | 0.0000 | 1 | B | RNase P class A | G | 77 | U | 78 | A | 79 | A | 80 | C | 81 | C | 83 | cWW | ||
| 3 | HL_3P49_002 | 3P49 | 0.3201 | 1 | A | Glycine riboswitch | G | 41 | U | 42 | A | 43 | A | 44 | A | 45 | C | 47 | cWW | tWH | |
| 4 | HL_2XZM_003 | 2XZM | 0.8206 | 1 | A | SSU rRNA | C | 148 | U | 149 | A | 150 | A | 151 | U | 152 | G | 154 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACGC | 2 |
| GUAAAUC | 1 |
| CUAAUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACG | 2 |
| UAAAU | 1 |
| UAAUU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_98523.1 | Only in the parent motif |
|---|---|---|---|
| HL_08706.1 Compare | HL_1U9S_001, HL_2XZM_003 | HL_3Q1Q_002, HL_3P49_002 | |
| HL_47025.1 Compare | HL_3Q1Q_002 | HL_3P49_002, HL_1U9S_001, HL_2XZM_003 | HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3O30_003, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_025, HL_3O58_002, HL_2ZJR_004, HL_1S72_022, HL_1S72_045, HL_3AM1_002, HL_2AW7_013 |
| HL_77557.1 Compare | HL_3P49_002 | HL_3Q1Q_002, HL_1U9S_001, HL_2XZM_003 | HL_2ZJR_035 |
Children motifs
| Child motif | Common motif instances | Only in HL_98523.1 | Only in the child motif |
|---|---|---|---|
| HL_98523.2 Compare | HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001 | HL_2XZM_003 | HL_4BPP_003 |
- Annotations
-
- (3)
- GNRA (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.32 | Avg 0.48 | Max 0.91
Coloring options: