Motif HL_99769.2 Version HL_99769.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-6 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_009 | 7A0S | 0.6079 | 4 | X | LSU rRNA | A | 254 | A | 255 | C | 256 | G | 257 | C | 258 | G | 263 | U | 264 | U | 265 | ncWW | ncSH | |||
| 2 | HL_6ZDU_001 | 6ZDU | 0.5809 | 4 | C | Chains: C,D | C | 1271 | C | 1272 | C | 1273 | G | 1274 | A | 1275 | G | 1279 | G | 1281 | G | 1282 | ncWW | ncWW | ncWH | ||
| 3 | HL_5E6M_001 | 5E6M | 0.0000 | 3 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS | ||
| 4 | HL_4QEI_001 | 4QEI | 0.1172 | 3 | C | tRNA | G | 12 | U | 13 | A | 14 | G | 15 | U | 16 | A | 21 | U | 22 | C | 23 | cWW | cwW | cWS | ||
| 5 | HL_2D6F_004 | 2D6F | 0.2338 | 4 | F | tRNA | G | 912 | U | 913 | A | 914 | G | 915 | U | 916 | A | 921 | U | 922 | C | 923 | cWW | ncwW | ncWS | ||
| 6 | HL_6N5P_001 | 6N5P | 0.6323 | 1 | A | cyclic di-AMP riboswitch | A | 14 | U | 15 | G | 16 | U | 17 | G | 19 | U | 20 | U | 21 | U | 22 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAGUGGUAUC | 2 |
| AACGCUUGCGUU | 1 |
| CCCGAAUUGUGG | 1 |
| GUAGUGGUAAUC | 1 |
| AUGUCGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGUGGUAU | 2 |
| ACGCUUGCGU | 1 |
| CCGAAUUGUG | 1 |
| UAGUGGUAAU | 1 |
| UGUCGUU | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.46 | Max 0.80
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