Motif HL_99908.3 Version HL_99908.3 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 2-10 | 3-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_035 | 1VW3 | 0.5084 | 0 | A | 21S ribosomal RNA | U | 1811 | U | 1812 | A | 1813 | U | 1814 | U | 1815 | A | 1816 | U | 1817 | G | 1818 | A | 1819 | G | 1820 | cWW | ||||
| 2 | HL_2QBG_050 | 2QBG | 0.3481 | 1 | B | 23S rRNA | G | 1910 | U | 1911 | A | 1912 | C | 1914 | U | 1915 | A | 1916 | U | 1917 | A | 1918 | A | 1919 | C | 1920 | cWW | tHW | cSH | ||
| 3 | HL_3U5H_049 | 3U5H | 0.1132 | 1 | 5 | 25S rRNA | G | 2253 | U | 2254 | A | 2255 | C | 2257 | U | 2258 | A | 2259 | U | 2260 | G | 2261 | A | 2262 | C | 2263 | cWW | tHW | |||
| 4 | HL_4NVV_046 | 4NVV | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 1932 | U | 1933 | A | 1934 | C | 1936 | U | 1937 | A | 1938 | U | 1939 | A | 1940 | A | 1941 | C | 1942 | cWW | tHW | cSH | ||
| 5 | HL_1VWW_049 | 1VWW | 0.3189 | -4 | 5 | 28S ribosomal RNA | G | 3757 | U | 3758 | A | 3759 | C | 3761 | U | 3762 | A | 3763 | U | 3764 | G | 3765 | A | 3766 | C | 3767 | cWW | ntSH | tHW | ||
| 6 | HL_1VX6_049 | 1VX6 | 0.3316 | 1 | A | 28S ribosomal RNA | G | 2546 | U | 2547 | A | 2548 | C | 2550 | U | 2551 | A | 2552 | U | 2553 | G | 2554 | A | 2555 | C | 2556 | cWW | ntSH | ntHW | ||
| 7 | HL_4CUV_049 | 4CUV | 0.3746 | 1 | 1 | 25S RRNA | G | 2253 | U | 2254 | A | 2255 | C | 2257 | U | 2258 | A | 2259 | U | 2260 | G | 2261 | A | 2262 | C | 2263 | ncWW | ntHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACUAUGAC | 3 |
| GUAACUAUAAC | 2 |
| UUAUUAUGAG | 1 |
| CCGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACUAUGA | 3 |
| UAACUAUAA | 2 |
| UAUUAUGA | 1 |
| CGAG | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_99908.3 | Only in the parent motif |
|---|---|---|---|
| HL_99908.2 Compare | HL_2QBG_050, HL_3U5H_049, HL_4NVV_046, HL_1VW3_035, HL_4CUV_049 | HL_1VX6_049, HL_1VWW_049 |
Children motifs
| Child motif | Common motif instances | Only in HL_99908.3 | Only in the child motif |
|---|---|---|---|
| HL_99908.4 Compare | HL_1VX6_049, HL_4CUV_049, HL_2QBG_050, HL_1VW3_035, HL_1VWW_049, HL_3U5H_049 | HL_4NVV_046 | HL_4QCN_046 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cSH-tHW-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.35 | Max 0.61
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