#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6 7 8 9 101-102-92-103-78-9
1 HL_1VW3_0351VW30.49070A21S ribosomal RNAU1811U1812A1813U1814U1815A1816U1817G1818A1819G1820cWW
2 HL_2QBG_0502QBG0.32281B23S rRNAG1910U1911A1912C1914U1915A1916U1917A1918A1919C1920cWWtHWcSH
3 HL_4QCN_0464QCN0.00001A23S Ribosomal RNAG1932U1933A1934C1936U1937A1938U1939A1940A1941C1942cWWtHWcSH
4 HL_3U5H_0493U5H0.11461525S rRNAG2253U2254A2255C2257U2258A2259U2260G2261A2262C2263cWWtHW
5 HL_1VWW_0491VWW0.3210-4528S ribosomal RNAG3757U3758A3759C3761U3762A3763U3764G3765A3766C3767cWWntSHtHW
6 HL_1VX6_0491VX60.33291A28S ribosomal RNAG2546U2547A2548C2550U2551A2552U2553G2554A2555C2556cWWntSHntHW
7 HL_4CUV_0494CUV0.37781125S RRNAG2253U2254A2255C2257U2258A2259U2260G2261A2262C2263ncWWntHW

3D structures

Complete motif including flanking bases
SequenceCounts
GUAACUAUGAC3
GUAACUAUAAC2
UUAUUAUGAG1
CCGAGG1
Non-Watson-Crick part of the motif
SequenceCounts
UAACUAUGA3
UAACUAUAA2
UAUUAUGA1
CGAG1

Release history

Release1.17
Date2014-09-06
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_99908.4Only in the parent motif
HL_99908.3
Compare
HL_1VX6_049, HL_4CUV_049, HL_2QBG_050, HL_1VW3_035, HL_1VWW_049, HL_3U5H_049HL_4QCN_046HL_4NVV_046

Children motifs

Child motifCommon motif instancesOnly in HL_99908.4Only in the child motif
HL_99908.5
Compare
HL_4CUV_049, HL_2QBG_050, HL_1VW3_035, HL_4QCN_046, HL_1VX6_049, HL_3U5H_049HL_1VWW_049HL_4W21_049
Annotations
  • (7)
  • Basepair signature
    cWW-cSH-tHW-R-R-R
    Heat map statistics
    Min 0.11 | Avg 0.35 | Max 0.61
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