Motif IL_00209.1 Version IL_00209.1 of this group appears in releases 0.1 to 0.5
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-4 | 2-11 | 5-8 | 5-11 | 6-7 | 6-10 | 7-9 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_100 | 1S72 | 0 | 2 | Minor groove platform related (H) | 9 | 5S rRNA | G | 21 | G | 22 | G | 25 | C | 26 | C | 27 | U | 28 | * | A | 54 | U | 55 | A | 56 | A | 57 | G | 58 | C | 59 | cWW | ntSW | ncWB | cWW | cSW | cWW | ntSW | ncSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUUGCCU*AUAAGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUUGCC*UAAG | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 |
---|---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_00209.1 | Only in the child motif |
---|---|---|---|
IL_12211.1 Compare | IL_1S72_100 | IL_3U5H_144 |
- Annotations
-
- Minor groove platform related (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: