Motif IL_00225.1 Version IL_00225.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	3-4
1	IL_5J7L_271	5J7L	0.6262	Single bulged G	DA	LSU rRNA	U	913	G	914	C	915	*	G	862	A	863	cWW	cWW
2	IL_6CZR_113	6CZR	0.0000	Single bulged G	1a	SSU rRNA	U	31	G	32	A	33	*	U	536	A	537	cWW	cWW
3	IL_4LFB_001	4LFB	0.1363	Single bulged G	A	SSU rRNA	U	30	G	31	A	32	*	U	552	A	553	cWW	cWW
4	IL_5J7L_001	5J7L	0.1626	Single bulged G	AA	SSU rRNA	U	30	G	31	A	32	*	U	552	A	553	cWW	cWW
5	IL_4C7O_004	4C7O	0.5030	Single bulged G	E	SRP RNA	U	27	G	28	U	29	*	A	15	A	16	cWW	cWW
6	IL_5TBW_037	5TBW	0.6306	Single bulged G	1	LSU rRNA	A	983	G	984	U	985	*	A	1099	U	1100	cWW	cWW
7	IL_5U30_002	5U30	0.8130	Single bulged G	B	sgRNA	A	7	G	8	G	9	*	C	3	U	4	cWW	cWW
8	IL_5TBW_029	5TBW	1.0486	Single bulged G	1	LSU rRNA	G	859	G	860	C	861	*	G	833	U	834	cWW	cWW
9	IL_7A0S_017	7A0S	1.0385	Single bulged G	X	LSU rRNA	G	741	G	742	A	743	*	U	715	U	716	cWW	cWW
10	IL_7RQB_020	7RQB	1.0454	Single bulged G	1A	LSU rRNA	G	728	G	729	C	730	*	G	702	U	703	cWW	cWW
11	IL_5J7L_262	5J7L	1.0229	Single bulged G	DA	LSU rRNA	G	728	G	729	A	730	*	U	702	U	703	cWW	cWW
12	IL_4V9F_026	4V9F	0.9997	Single bulged G	0	LSU rRNA	A	819	G	820	U	821	*	A	793	U	794	cWW	cWW
13	IL_4WF9_023	4WF9	0.9915	Single bulged G	X	LSU rRNA	G	773	G	774	A	775	*	U	747	U	748	cWW	cWW
14	IL_3SUX_001	3SUX	0.7578	Single bulged G	X	THF riboswitch	G	76	G	77	U	78	*	G	20	C	21	cWW	cWW
15	IL_4LVW_002	4LVW	0.7785	Single bulged G	A	THF riboswitch	G	67	G	68	U	69	*	G	17	C	18	cWW	cWW
16	IL_3IGI_004	3IGI	0.8800	Single bulged G	A	Group IIC intron	U	82	G	83	U	84	*	A	99	A	100	cWW	cWW
17	IL_7D7V_002	7D7V	0.8281	Single bulged G	A	nadA RNA	U	44	G	45	A	46	*	U	21	G	22	cWW	cWW
18	IL_6TFF_002	6TFF	0.8977	Single bulged G	A	nadA RNA	C	37	G	38	A	39	*	U	22	G	23	cWW	cWW
19	IL_7D7W_002	7D7W	0.9480	Single bulged G	A	nadA RNA	C	37	G	38	C	39	*	G	22	G	23	cWW	cWW
20	IL_4V88_442	4V88	0.8768	Single bulged G	A6	SSU rRNA	G	1149	G	1150	A	1151	*	U	1627	U	1628	cWW	cWW
21	IL_6CZR_148	6CZR	0.8860	Single bulged G	1a	SSU rRNA	G	903	G	904	G	905	*	U	1373	U	1374	cWW	ncWW
22	IL_5J7L_040	5J7L	0.9713	Single bulged G	AA	SSU rRNA	G	925	G	926	G	927	*	U	1390	U	1391	cWW	cWW
23	IL_4LFB_036	4LFB	0.9133	Single bulged G	A	SSU rRNA	G	925	G	926	G	927	*	U	1390	U	1391	cWW	cWW
24	IL_3NDB_004	3NDB	0.7831	Single bulged G	M	SRP RNA	C	239	G	240	C	241	*	G	137	G	138	ncWW	cWW
25	IL_2IZN_001	2IZN	0.9579	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_1	G	6\|\|\|\|P_1	C	7\|\|\|\|P_1	*	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	cWW	cWW
26	IL_5J7L_019	5J7L	1.1691	Single bulged G	AA	SSU rRNA	U	387	G	388	A	389	*	U	375	G	376	cWW	cWW
27	IL_4LFB_016	4LFB	1.1993	Single bulged G	A	SSU rRNA	U	387	G	388	A	389	*	U	375	G	376	cWW	cWW
28	IL_4V9F_041	4V9F	1.1789	Single bulged G	0	LSU rRNA	U	1136	G	1137	G	1138	*	C	1225	G	1226	cWW	cWW
29	IL_4V9F_010	4V9F	1.2802	Single bulged G	0	LSU rRNA	U	374	G	375	C	376	*	G	274	G	275	cWW	cWW
30	IL_3D0U_005	3D0U	1.6076	Single bulged G	A	Lysine Riboswitch RNA	U	106	G	107	G	108	*	C	81	G	82	cWW	ncWW
31	IL_3DIL_005	3DIL	1.5806	Single bulged G	A	RNA (174-MER)	U	109	G	110	C	111	*	G	84	G	85	cWW	cWW
32	IL_1U9S_006	1U9S	1.6863	Major groove intercalation	A	RIBONUCLEASE P	U	158	G	159	C	160	*	G	140	G	141	ncWW	cWW
33	IL_7A0S_099	7A0S	1.7213	Major groove intercalation	X	LSU rRNA	U	2853	G	2854	C	2855	*	G	2813	G	2814	cWW	cWW
34	IL_6JQ5_001	6JQ5	1.6325	Stack outside cWW	A	Hatchet ribozyme	U	62	G	63	C	64	*	G	31	G	32	cWW	cWW
35	IL_5DEA_002	5DEA	1.6177	Single bulged G	C	sc1	C	5	G	6	G	7	*	C	30	G	31	cWW	cWW
36	IL_5DE8_001	5DE8	1.6303	Single bulged G	A	sc1	C	5	G	6	G	7	*	C	30	G	31	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGC*GG	5
GGA*UU	4
UGA*UA	3
UGA*UG	3
CGC*GG	3
GGG*UU	3
UGU*AA	2
AGU*AU	2
GGC*GU	2
GGU*GC	2
UGG*CG	2
CGG*CG	2
UGC*GA	1
AGG*CU	1
CGA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*	36

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged G (33)
Major groove intercalation (2)
Stack outside cWW (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.06 | Avg 0.90 | Max 1.72

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Coloring options: Nucleotide numbers

Motif IL_00225.1 Version IL_00225.1 of this group appears in releases 3.77 to 3.79 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_00225.1 Version IL_00225.1 of this group appears in releases 3.77 to 3.79

Download

Csv

Json