IL_00225.6

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_5J7L_271	5J7L	1.1192	Single bulged G	DA	LSU rRNA	U	913	G	914	C	915	*	G	862	A	863	cWW	cWW
2	IL_4C7O_004	4C7O	0.6152	Single bulged G	E	SRP RNA	U	27	G	28	U	29	*	A	15	A	16	cWW	cWW
3	IL_8I3Z_004	8I3Z	0.8792	Single bulged G	A+B	RNA (24-mer) + RNA (31-MER)	C	10	G	11	U	12	*	A	53	G	54	cWW	cWW
4	IL_5J7L_001	5J7L	0.8563	Single bulged G	AA	SSU rRNA	U	30	G	31	A	32	*	U	552	A	553	cWW	cWW
5	IL_4LFB_001	4LFB	0.8869	Single bulged G	A	SSU rRNA	U	30	G	31	A	32	*	U	552	A	553	cWW	cWW
6	IL_6CZR_113	6CZR	0.8977	Single bulged G	1a	SSU rRNA	U	31	G	32	A	33	*	U	536	A	537	cWW	cWW
7	IL_5U30_002	5U30	0.9606	Single bulged G	B	sgRNA	A	7	G	8	G	9	*	C	3	U	4	cWW	cWW
8	IL_5TBW_029	5TBW	0.6161	Single bulged G	1	LSU rRNA	G	859	G	860	C	861	*	G	833	U	834	cWW	cWW
9	IL_7A0S_017	7A0S	0.5808	Single bulged G	X	LSU rRNA	G	741	G	742	A	743	*	U	715	U	716	cWW	cWW
10	IL_8C3A_032	8C3A	0.5531	Single bulged G	1	LSU rRNA	G	855	G	856	C	857	*	G	829	U	830	cWW	cWW
11	IL_4WF9_023	4WF9	0.5493	Single bulged G	X	LSU rRNA	G	773	G	774	A	775	*	U	747	U	748	cWW	cWW
12	IL_8VTW_019	8VTW	0.5992	Single bulged G	1A	LSU rRNA	G	728	G	729	C	730	*	G	702	U	703	cWW	cWW
13	IL_5J7L_262	5J7L	0.6001	Single bulged G	DA	LSU rRNA	G	728	G	729	A	730	*	U	702	U	703	cWW	cWW
14	IL_4V9F_026	4V9F	0.5514	Single bulged G	0	LSU rRNA	A	819	G	820	U	821	*	A	793	U	794	cWW	cWW
15	IL_3SUX_001	3SUX	0.6597	Single bulged G	X	THF riboswitch	G	76	G	77	U	78	*	G	20	C	21	cWW	cWW
16	IL_4LVW_002	4LVW	0.6215	Single bulged G	A	THF riboswitch	G	67	G	68	U	69	*	G	17	C	18	cWW	cWW
17	IL_8TSV_003	8TSV	0.6605	Single bulged G	B+A	Zika virus stem-loop A (SLA) top stem	U	6	G	7	C	8	*	G	19	A	20	cWW	cWW
18	IL_2IZN_001	2IZN	0.4434	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_1	G	6\|\|\|\|P_1	C	7\|\|\|\|P_1	*	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	cWW	cWW
19	IL_3NDB_004	3NDB	0.3652	Single bulged G	M	SRP RNA	C	239	G	240	C	241	*	G	137	G	138	ncWW	cWW
20	IL_8TSV_002	8TSV	0.3893	Single bulged G	C+D	Zika virus stem-loop A (SLA) top stem	U	6	G	7	C	8	*	G	19	A	20	cWW	cWW
21	IL_8C3A_040	8C3A	0.4005	Single bulged G	1	LSU rRNA	A	979	G	980	U	981	*	A	1095	U	1096	cWW	cWW
22	IL_5TBW_037	5TBW	0.4070	Single bulged G	1	LSU rRNA	A	983	G	984	U	985	*	A	1099	U	1100	cWW	cWW
23	IL_7D7V_002	7D7V	0.1922	Single bulged G	A	nadA RNA	U	44	G	45	A	46	*	U	21	G	22	cWW	cWW
24	IL_7D7W_002	7D7W	0.1016	Single bulged G	A	18GAAA (52-MER)	C	37	G	38	C	39	*	G	22	G	23	cWW	cWW
25	IL_6TFF_002	6TFF	0.0000	Single bulged G	A	nadA RNA	C	37	G	38	A	39	*	U	22	G	23	cWW	cWW
26	IL_4WF9_125	4WF9	0.2628	Single bulged G	X	LSU rRNA	C	2229	G	2230	C	2231	*	G	2247	G	2248	ncWW	ncWW
27	IL_6CZR_148	6CZR	0.3966	Single bulged G	1a	SSU rRNA	G	903	G	904	G	905	*	U	1373	U	1374	cWW	ncWW
28	IL_4LFB_036	4LFB	0.4009	Single bulged G	A	SSU rRNA	G	925	G	926	G	927	*	U	1390	U	1391	cWW	cWW
29	IL_5J7L_040	5J7L	0.4042	Single bulged G	AA	SSU rRNA	G	925	G	926	G	927	*	U	1390	U	1391	cWW	cWW
30	IL_8C3A_448	8C3A	0.3231	Single bulged G	CM	SSU rRNA	G	1134	G	1135	A	1136	*	U	1614	U	1615	cWW	cWW
31	IL_4V88_442	4V88	0.3191	Single bulged G	A6	SSU rRNA	G	1149	G	1150	A	1151	*	U	1627	U	1628	cWW	cWW
32	IL_8C3A_048	8C3A	0.4721	Single bulged G	1	LSU rRNA	U	1070	G	1071	C	1072	*	G	1079	A	1080	cWW	cWW
33	IL_3IGI_004	3IGI	0.4643	Single bulged G	A	Group IIC intron	U	82	G	83	U	84	*	A	99	A	100	cWW	cWW
34	IL_6CZR_358	6CZR	0.5559	Single bulged G	1a	SSU rRNA	U	383	G	384	A	385	*	U	371	G	372	ncWW	cWW
35	IL_4LFB_016	4LFB	0.5577	Single bulged G	A	SSU rRNA	U	387	G	388	A	389	*	U	375	G	376	cWW	cWW
36	IL_5J7L_019	5J7L	0.5328	Single bulged G	AA	SSU rRNA	U	387	G	388	A	389	*	U	375	G	376	cWW	cWW
37	IL_8C3A_417	8C3A	0.6998	Single bulged G	CM	SSU rRNA	G	456	G	457	A	458	*	U	445	C	446	cWW	cWW
38	IL_4V9F_041	4V9F	0.6552	Single bulged G	0	LSU rRNA	U	1136	G	1137	G	1138	*	C	1225	G	1226	cWW	cWW
39	IL_4V9F_010	4V9F	0.7772	Single bulged G	0	LSU rRNA	U	374	G	375	C	376	*	G	274	G	275	cWW	cWW
40	IL_3D0U_005	3D0U	1.1580	Single bulged G	A	Lysine Riboswitch RNA	U	106	G	107	G	108	*	C	81	G	82	cWW	ncWW
41	IL_3DIL_005	3DIL	1.1281	Single bulged G	A	RNA (174-MER)	U	109	G	110	C	111	*	G	84	G	85	cWW	cWW
42	IL_6JQ5_004	6JQ5	1.2733	Multiple bulged bases	B	RNA (82-MER)	U	62	G	63\|\|A	C	64	*	G	31	G	32	cWW	cWW
43	IL_7A0S_099	7A0S	1.3920	Major groove intercalation	X	LSU rRNA	U	2853	G	2854	C	2855	*	G	2813	G	2814	cWW	cWW
44	IL_1U9S_006	1U9S	1.3206	Major groove intercalation	A	RIBONUCLEASE P	U	158	G	159	C	160	*	G	140	G	141	ncWW	cWW
45	IL_6JQ5_001	6JQ5	1.4989	Stack outside cWW	A	RNA (82-MER)	U	62	G	63	C	64	*	G	31	G	32	cWW	cWW
46	IL_5J7L_395	5J7L	1.5731	Single bulged G	AA	SSU rRNA	U	93	G	94	C	95	*	G	75	G	76	ncWWa	ncWW
47	IL_5DEA_002	5DEA	1.4933	Single bulged G	C	sc1	C	5	G	6	G	7	*	C	30	G	31	cWW	cWW
48	IL_5DE8_001	5DE8	1.5093	Single bulged G	A	sc1	C	5	G	6	G	7	*	C	30	G	31	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGC*GG	7
GGA*UU	5
UGC*GA	4
CGC*GG	4
UGA*UG	4
UGA*UA	3
GGC*GU	3
AGU*AU	3
GGG*UU	3
UGU*AA	2
GGU*GC	2
UGG*CG	2
CGG*CG	2
CGU*AG	1
AGG*CU	1
CGA*UG	1
GGA*UC	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*	48

Release history

Release	3.89
Date	2024-10-09
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_00225.6 Version IL_00225.6 of this group appears in releases 3.89 to 3.89 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_00225.6 Version IL_00225.6 of this group appears in releases 3.89 to 3.89

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Csv

Json