IL_00225.8

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	3-4
1	IL_5DE8_001	5DE8	1.5093	Single bulged G	A	sc1	C	5	G	6	G	7	*	C	30	G	31	cWW	cWW
2	IL_5DEA_002	5DEA	1.4933	Single bulged G	C	sc1	C	5	G	6	G	7	*	C	30	G	31	cWW	cWW
3	IL_5J7L_395	5J7L	1.5731	Single bulged G	AA	SSU rRNA	U	93	G	94	C	95	*	G	75	G	76	ncWWa	ncWW
4	IL_7A0S_099	7A0S	1.3920	Major groove intercalation	X	LSU rRNA	U	2853	G	2854	C	2855	*	G	2813	G	2814	cWW	cWW
5	IL_1U9S_006	1U9S	1.3206	Major groove intercalation	A	RIBONUCLEASE P	U	158	G	159	C	160	*	G	140	G	141	ncWW	cWW
6	IL_3DIL_005	3DIL	1.1281	Single bulged G	A	RNA (174-MER)	U	109	G	110	C	111	*	G	84	G	85	cWW	cWW
7	IL_3D0U_005	3D0U	1.1580	Single bulged G	A	Lysine Riboswitch RNA	U	106	G	107	G	108	*	C	81	G	82	cWW	ncWW
8	IL_4V9F_010	4V9F	0.7772	Single bulged G	0	LSU rRNA	U	374	G	375	C	376	*	G	274	G	275	cWW	cWW
9	IL_4V9F_041	4V9F	0.6552	Single bulged G	0	LSU rRNA	U	1136	G	1137	G	1138	*	C	1225	G	1226	cWW	cWW
10	IL_6CZR_358	6CZR	0.5559	Single bulged G	1a	SSU rRNA	U	383	G	384	A	385	*	U	371	G	372	ncWW	cWW
11	IL_4LFB_016	4LFB	0.5577	Single bulged G	A	SSU rRNA	U	387	G	388	A	389	*	U	375	G	376	cWW	cWW
12	IL_5J7L_019	5J7L	0.5328	Single bulged G	AA	SSU rRNA	U	387	G	388	A	389	*	U	375	G	376	cWW	cWW
13	IL_8C3A_417	8C3A	0.6998	Single bulged G	CM	SSU rRNA	G	456	G	457	A	458	*	U	445	C	446	cWW	cWW
14	IL_8P9A_398	8P9A	0.6659	Single bulged G	sR	SSU rRNA	G	458	G	459	A	460	*	U	447	C	448	cWW	cWW
15	IL_8TSV_003	8TSV	0.6605	Single bulged G	B+A	Zika virus stem-loop A (SLA) top stem	U	6	G	7	C	8	*	G	19	A	20	cWW	cWW
16	IL_7A0S_017	7A0S	0.5808	Single bulged G	X	LSU rRNA	G	741	G	742	A	743	*	U	715	U	716	cWW	cWW
17	IL_8P9A_257	8P9A	0.6070	Single bulged G	AR	LSU rRNA	G	859	G	860	C	861	*	G	833	U	834	cWW	cWW
18	IL_4V9F_026	4V9F	0.5514	Single bulged G	0	LSU rRNA	A	819	G	820	U	821	*	A	793	U	794	cWW	cWW
19	IL_5J7L_262	5J7L	0.6001	Single bulged G	DA	LSU rRNA	G	728	G	729	A	730	*	U	702	U	703	cWW	cWW
20	IL_9DFE_018	9DFE	0.5860	Single bulged G	1A	LSU rRNA	G	728	G	729	C	730	*	G	702	U	703	cWW	cWW
21	IL_4WF9_023	4WF9	0.5493	Single bulged G	X	LSU rRNA	G	773	G	774	A	775	*	U	747	U	748	cWW	cWW
22	IL_3SUX_001	3SUX	0.6597	Single bulged G	X	THF riboswitch	G	76	G	77	U	78	*	G	20	C	21	cWW	cWW
23	IL_4LVW_002	4LVW	0.6215	Single bulged G	A	THF riboswitch	G	67	G	68	U	69	*	G	17	C	18	cWW	cWW
24	IL_2IZN_001	2IZN	0.4434	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_1	G	6\|\|\|\|P_1	C	7\|\|\|\|P_1	*	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	cWW	cWW
25	IL_3NDB_004	3NDB	0.3652	Single bulged G	M	SRP RNA	C	239	G	240	C	241	*	G	137	G	138	ncWW	cWW
26	IL_8P9A_265	8P9A	0.4040	Single bulged G	AR	LSU rRNA	A	983	G	984	U	985	*	A	1099	U	1100	cWW	cWW
27	IL_8TSV_002	8TSV	0.3893	Single bulged G	C+D	Zika virus stem-loop A (SLA) top stem	U	6	G	7	C	8	*	G	19	A	20	cWW	cWW
28	IL_6CZR_148	6CZR	0.3966	Single bulged G	1a	SSU rRNA	G	903	G	904	G	905	*	U	1373	U	1374	cWW	ncWW
29	IL_4LFB_036	4LFB	0.4009	Single bulged G	A	SSU rRNA	G	925	G	926	G	927	*	U	1390	U	1391	cWW	cWW
30	IL_5J7L_040	5J7L	0.4042	Single bulged G	AA	SSU rRNA	G	925	G	926	G	927	*	U	1390	U	1391	cWW	cWW
31	IL_8P9A_430	8P9A	0.3510	Single bulged G	sR	SSU rRNA	G	1149	G	1150	A	1151	*	U	1627	U	1628	cWW	cWW
32	IL_8C3A_448	8C3A	0.3231	Single bulged G	CM	SSU rRNA	G	1134	G	1135	A	1136	*	U	1614	U	1615	cWW	cWW
33	IL_7D7W_002	7D7W	0.1016	Single bulged G	A	nadA RNA	C	37	G	38	C	39	*	G	22	G	23	cWW	cWW
34	IL_6TFF_002	6TFF	0.0000	Single bulged G	A	nadA RNA	C	37	G	38	A	39	*	U	22	G	23	cWW	cWW
35	IL_7D7V_002	7D7V	0.1922	Single bulged G	A	nadA RNA	U	44	G	45	A	46	*	U	21	G	22	cWW	cWW
36	IL_4WF9_125	4WF9	0.2628	Single bulged G	X	LSU rRNA	C	2229	G	2230	C	2231	*	G	2247	G	2248	ncWW	ncWW
37	IL_3IGI_004	3IGI	0.4643	Single bulged G	A	Group IIC intron	U	82	G	83	U	84	*	A	99	A	100	cWW	cWW
38	IL_4C7O_004	4C7O	0.6152	Single bulged G	E	SRP RNA	U	27	G	28	U	29	*	A	15	A	16	cWW	cWW
39	IL_8I3Z_004	8I3Z	0.8792	Single bulged G	A+B	RNA (24-mer) + RNA (31-MER)	C	10	G	11	U	12	*	A	53	G	54	cWW	cWW
40	IL_5J7L_001	5J7L	0.8563	Single bulged G	AA	SSU rRNA	U	30	G	31	A	32	*	U	552	A	553	cWW	cWW
41	IL_4LFB_001	4LFB	0.8869	Single bulged G	A	SSU rRNA	U	30	G	31	A	32	*	U	552	A	553	cWW	cWW
42	IL_6CZR_113	6CZR	0.8977	Single bulged G	1a	SSU rRNA	U	31	G	32	A	33	*	U	536	A	537	cWW	cWW
43	IL_5J7L_271	5J7L	1.1192	Single bulged G	DA	LSU rRNA	U	913	G	914	C	915	*	G	862	A	863	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGC*GG	5
GGA*UU	5
UGA*UG	4
CGC*GG	4
UGC*GA	3
GGG*UU	3
UGA*UA	3
CGG*CG	2
UGG*CG	2
GGA*UC	2
GGC*GU	2
AGU*AU	2
GGU*GC	2
UGU*AA	2
CGA*UG	1
CGU*AG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*	43

Release history

Release	3.91
Date	2024-12-04
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_00225.8 Version IL_00225.8 of this group appears in releases 3.91 to 3.91 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_00225.8 Version IL_00225.8 of this group appears in releases 3.91 to 3.91

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Csv

Json