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Motif IL_04059.2 Version IL_04059.2 of this group appears in releases 3.87 to 3.88

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_4WF9_0544WF90.30121Other ILX LSU rRNAC1624U1625A1626G1627*C1461G1462A1463G1465cWWcWW
2 IL_6DME_0016DME0.22432tSH-tHWAppGpp RiboswitchC11U12A13G14*C40A41A42G45cWWntWWtHScWW
3 IL_5T83_0015T830.18972tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C42A43A44G47cWWtWHtHScWW
4 IL_6DLR_0016DLR0.15672tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C45A46A47G50cWWtWHtHScWW
5 IL_6CK5_0016CK50.15232tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C45G46A47G50cWWtWHtHScWW
6 IL_5U3G_0015U3G0.11342tSH-tHWBGuanidine-I riboswitchC6U7A8G9*C30G31A32G35cWWtWHtHScWW
7 IL_5J7L_2975J7L0.00001tSH-tHWDA LSU rRNAC1437U1438A1439U1440*A1551A1552A1553G1555cWWtWHtHScWW
8 IL_7MLW_0027MLW0.11402FGuanidine-I riboswitchC7U8A9G10*C51G52A53G56cWWtWHtHScWW
9 IL_7A0S_0537A0S0.13621tSH-tHWX LSU rRNAC1451U1452A1453U1454*A1567A1568A1569G1571cWWtWHtHScWW
10 IL_3NDB_0073NDB0.24263tSH-tHWM SRP RNAG223U224A225G226*C192G193A194C198cWWtWHtHScWW
11 IL_8VTW_0568VTW0.15501tSH-tHW (H)1A LSU rRNAC1437U1438A1439G1440*C1551G1552A1553G1555cWWtWHtHScWW
12 IL_8VTW_0108VTW0.21441tSH-tHW (H)1A LSU rRNAA357U358A359G360*C280G281A282U284cWWtWHtHScWW
13 IL_2ZY6_0012ZY60.51771tSH-tHWAphenylalanyl transfer RNAA7U8A9G10*C25G26A27U29cWWtWHntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAG*CGAGAG2
CUAG*CGAUG1
CUAG*CAAGCG1
CUAG*CAAGAG1
CUAG*CAAGUG1
CUAG*CGAGCG1
CUAU*AAAUG1
CUAU*AAACG1
GUAG*CGAACCC1
CUAG*CGAAG1
AUAG*CGAAU1
AUAG*CGAGU1
Non-Watson-Crick part of the motif
SequenceCounts
UA*GAGA2
UA*GAA2
UA*GAU1
UA*AAGC1
UA*AAGA1
UA*AAGU1
UA*GAGC1
UA*AAU1
UA*AAC1
UA*GAACC1
UA*GAG1

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW (9)
  • tSH-tHW (H) (2)
  • Other IL (1)
  • (1)
    • Basepair signature
    cWW-tWH-tHS-cWW
    Heat map statistics
    Min 0.11 | Avg 0.25 | Max 0.59
    Help

    Coloring options:

    IL_4WF9_054:IL_4WF9_054 = 0IL_4WF9_054:IL_6DME_001 = 0.2961IL_4WF9_054:IL_5T83_001 = 0.3035IL_4WF9_054:IL_6DLR_001 = 0.3261IL_4WF9_054:IL_6CK5_001 = 0.3361IL_4WF9_054:IL_5U3G_001 = 0.3366IL_4WF9_054:IL_5J7L_297 = 0.3012IL_4WF9_054:IL_7MLW_002 = 0.2911IL_4WF9_054:IL_7A0S_053 = 0.3291IL_4WF9_054:IL_3NDB_007 = 0.3913IL_4WF9_054:IL_8VTW_056 = 0.573IL_4WF9_054:IL_8VTW_010 = 0.5867IL_4WF9_054:IL_2ZY6_001 = 0.3846IL_6DME_001:IL_4WF9_054 = 0.2961IL_6DME_001:IL_6DME_001 = 0IL_6DME_001:IL_5T83_001 = 0.1754IL_6DME_001:IL_6DLR_001 = 0.1489IL_6DME_001:IL_6CK5_001 = 0.1961IL_6DME_001:IL_5U3G_001 = 0.2093IL_6DME_001:IL_5J7L_297 = 0.2243IL_6DME_001:IL_7MLW_002 = 0.1958IL_6DME_001:IL_7A0S_053 = 0.2468IL_6DME_001:IL_3NDB_007 = 0.2815IL_6DME_001:IL_8VTW_056 = 0.474IL_6DME_001:IL_8VTW_010 = 0.5005IL_6DME_001:IL_2ZY6_001 = 0.5036IL_5T83_001:IL_4WF9_054 = 0.3035IL_5T83_001:IL_6DME_001 = 0.1754IL_5T83_001:IL_5T83_001 = 0IL_5T83_001:IL_6DLR_001 = 0.1304IL_5T83_001:IL_6CK5_001 = 0.2002IL_5T83_001:IL_5U3G_001 = 0.1603IL_5T83_001:IL_5J7L_297 = 0.1897IL_5T83_001:IL_7MLW_002 = 0.1712IL_5T83_001:IL_7A0S_053 = 0.2011IL_5T83_001:IL_3NDB_007 = 0.2646IL_5T83_001:IL_8VTW_056 = 0.2382IL_5T83_001:IL_8VTW_010 = 0.2844IL_5T83_001:IL_2ZY6_001 = 0.3514IL_6DLR_001:IL_4WF9_054 = 0.3261IL_6DLR_001:IL_6DME_001 = 0.1489IL_6DLR_001:IL_5T83_001 = 0.1304IL_6DLR_001:IL_6DLR_001 = 0IL_6DLR_001:IL_6CK5_001 = 0.1098IL_6DLR_001:IL_5U3G_001 = 0.1669IL_6DLR_001:IL_5J7L_297 = 0.1567IL_6DLR_001:IL_7MLW_002 = 0.1544IL_6DLR_001:IL_7A0S_053 = 0.1799IL_6DLR_001:IL_3NDB_007 = 0.2225IL_6DLR_001:IL_8VTW_056 = 0.2582IL_6DLR_001:IL_8VTW_010 = 0.3157IL_6DLR_001:IL_2ZY6_001 = 0.4967IL_6CK5_001:IL_4WF9_054 = 0.3361IL_6CK5_001:IL_6DME_001 = 0.1961IL_6CK5_001:IL_5T83_001 = 0.2002IL_6CK5_001:IL_6DLR_001 = 0.1098IL_6CK5_001:IL_6CK5_001 = 0IL_6CK5_001:IL_5U3G_001 = 0.1682IL_6CK5_001:IL_5J7L_297 = 0.1523IL_6CK5_001:IL_7MLW_002 = 0.1757IL_6CK5_001:IL_7A0S_053 = 0.2096IL_6CK5_001:IL_3NDB_007 = 0.266IL_6CK5_001:IL_8VTW_056 = 0.2548IL_6CK5_001:IL_8VTW_010 = 0.3176IL_6CK5_001:IL_2ZY6_001 = 0.4886IL_5U3G_001:IL_4WF9_054 = 0.3366IL_5U3G_001:IL_6DME_001 = 0.2093IL_5U3G_001:IL_5T83_001 = 0.1603IL_5U3G_001:IL_6DLR_001 = 0.1669IL_5U3G_001:IL_6CK5_001 = 0.1682IL_5U3G_001:IL_5U3G_001 = 0IL_5U3G_001:IL_5J7L_297 = 0.1134IL_5U3G_001:IL_7MLW_002 = 0.1753IL_5U3G_001:IL_7A0S_053 = 0.1759IL_5U3G_001:IL_3NDB_007 = 0.2975IL_5U3G_001:IL_8VTW_056 = 0.1761IL_5U3G_001:IL_8VTW_010 = 0.2153IL_5U3G_001:IL_2ZY6_001 = 0.42IL_5J7L_297:IL_4WF9_054 = 0.3012IL_5J7L_297:IL_6DME_001 = 0.2243IL_5J7L_297:IL_5T83_001 = 0.1897IL_5J7L_297:IL_6DLR_001 = 0.1567IL_5J7L_297:IL_6CK5_001 = 0.1523IL_5J7L_297:IL_5U3G_001 = 0.1134IL_5J7L_297:IL_5J7L_297 = 0IL_5J7L_297:IL_7MLW_002 = 0.114IL_5J7L_297:IL_7A0S_053 = 0.1362IL_5J7L_297:IL_3NDB_007 = 0.2426IL_5J7L_297:IL_8VTW_056 = 0.155IL_5J7L_297:IL_8VTW_010 = 0.2144IL_5J7L_297:IL_2ZY6_001 = 0.5177IL_7MLW_002:IL_4WF9_054 = 0.2911IL_7MLW_002:IL_6DME_001 = 0.1958IL_7MLW_002:IL_5T83_001 = 0.1712IL_7MLW_002:IL_6DLR_001 = 0.1544IL_7MLW_002:IL_6CK5_001 = 0.1757IL_7MLW_002:IL_5U3G_001 = 0.1753IL_7MLW_002:IL_5J7L_297 = 0.114IL_7MLW_002:IL_7MLW_002 = 0IL_7MLW_002:IL_7A0S_053 = 0.177IL_7MLW_002:IL_3NDB_007 = 0.245IL_7MLW_002:IL_8VTW_056 = 0.1548IL_7MLW_002:IL_8VTW_010 = 0.2068IL_7MLW_002:IL_2ZY6_001 = 0.5172IL_7A0S_053:IL_4WF9_054 = 0.3291IL_7A0S_053:IL_6DME_001 = 0.2468IL_7A0S_053:IL_5T83_001 = 0.2011IL_7A0S_053:IL_6DLR_001 = 0.1799IL_7A0S_053:IL_6CK5_001 = 0.2096IL_7A0S_053:IL_5U3G_001 = 0.1759IL_7A0S_053:IL_5J7L_297 = 0.1362IL_7A0S_053:IL_7MLW_002 = 0.177IL_7A0S_053:IL_7A0S_053 = 0IL_7A0S_053:IL_3NDB_007 = 0.2181IL_7A0S_053:IL_8VTW_056 = 0.2042IL_7A0S_053:IL_8VTW_010 = 0.251IL_7A0S_053:IL_2ZY6_001 = 0.468IL_3NDB_007:IL_4WF9_054 = 0.3913IL_3NDB_007:IL_6DME_001 = 0.2815IL_3NDB_007:IL_5T83_001 = 0.2646IL_3NDB_007:IL_6DLR_001 = 0.2225IL_3NDB_007:IL_6CK5_001 = 0.266IL_3NDB_007:IL_5U3G_001 = 0.2975IL_3NDB_007:IL_5J7L_297 = 0.2426IL_3NDB_007:IL_7MLW_002 = 0.245IL_3NDB_007:IL_7A0S_053 = 0.2181IL_3NDB_007:IL_3NDB_007 = 0IL_3NDB_007:IL_8VTW_056 = 0.2933IL_3NDB_007:IL_8VTW_010 = 0.3398IL_3NDB_007:IL_2ZY6_001 = 0.5831IL_8VTW_056:IL_4WF9_054 = 0.573IL_8VTW_056:IL_6DME_001 = 0.474IL_8VTW_056:IL_5T83_001 = 0.2382IL_8VTW_056:IL_6DLR_001 = 0.2582IL_8VTW_056:IL_6CK5_001 = 0.2548IL_8VTW_056:IL_5U3G_001 = 0.1761IL_8VTW_056:IL_5J7L_297 = 0.155IL_8VTW_056:IL_7MLW_002 = 0.1548IL_8VTW_056:IL_7A0S_053 = 0.2042IL_8VTW_056:IL_3NDB_007 = 0.2933IL_8VTW_056:IL_8VTW_056 = 0IL_8VTW_056:IL_8VTW_010 = 0.1062IL_8VTW_056:IL_2ZY6_001 = 0.2123IL_8VTW_010:IL_4WF9_054 = 0.5867IL_8VTW_010:IL_6DME_001 = 0.5005IL_8VTW_010:IL_5T83_001 = 0.2844IL_8VTW_010:IL_6DLR_001 = 0.3157IL_8VTW_010:IL_6CK5_001 = 0.3176IL_8VTW_010:IL_5U3G_001 = 0.2153IL_8VTW_010:IL_5J7L_297 = 0.2144IL_8VTW_010:IL_7MLW_002 = 0.2068IL_8VTW_010:IL_7A0S_053 = 0.251IL_8VTW_010:IL_3NDB_007 = 0.3398IL_8VTW_010:IL_8VTW_056 = 0.1062IL_8VTW_010:IL_8VTW_010 = 0IL_8VTW_010:IL_2ZY6_001 = 0.2177IL_2ZY6_001:IL_4WF9_054 = 0.3846IL_2ZY6_001:IL_6DME_001 = 0.5036IL_2ZY6_001:IL_5T83_001 = 0.3514IL_2ZY6_001:IL_6DLR_001 = 0.4967IL_2ZY6_001:IL_6CK5_001 = 0.4886IL_2ZY6_001:IL_5U3G_001 = 0.42IL_2ZY6_001:IL_5J7L_297 = 0.5177IL_2ZY6_001:IL_7MLW_002 = 0.5172IL_2ZY6_001:IL_7A0S_053 = 0.468IL_2ZY6_001:IL_3NDB_007 = 0.5831IL_2ZY6_001:IL_8VTW_056 = 0.2123IL_2ZY6_001:IL_8VTW_010 = 0.2177IL_2ZY6_001:IL_2ZY6_001 = 0IL_4WF9_054IL_6DME_001IL_5T83_001IL_6DLR_001IL_6CK5_001IL_5U3G_001IL_5J7L_297IL_7MLW_002IL_7A0S_053IL_3NDB_007IL_8VTW_056IL_8VTW_010IL_2ZY6_001Discrepancy0.000.100.200.300.400.50
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