Motif IL_05145.1 Version IL_05145.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-8 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_121 | 5TBW | 0.4624 | 0 | 1 | LSU rRNA | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | ncWW | ncWW | ncWW | ncWWa | cWW | |||
| 2 | IL_7VYX_004 | 7VYX | 0.4553 | 0 | Partly complementary | C | sgRNA | G | 21 | G | 22 | A | 23 | U | 24 | G | 25 | * | U | 37 | U | 38 | A | 39 | U | 40 | C | 41 | cWW | ncWWa | ncWw | ncWw | ncWW | ||
| 3 | IL_4V88_422 | 4V88 | 0.3276 | 0 | A6 | SSU rRNA | C | 726 | U | 727 | U | 728 | G | 729 | G | 730 | * | C | 708 | C | 709 | U | 710 | U | 711 | G | 712 | cWW | cwW | cWw | ncWW | cWW | |||
| 4 | IL_8SP9_002 | 8SP9 | 0.2380 | 0 | Triple non-canonical cWW pairs | C | tRNA scaffold,CVB3 Cloverleaf RNA | C | 99 | U | 100 | U | 101 | U | 102 | G | 103 | * | C | 82 | U | 83 | C | 84 | U | 85 | G | 86 | cWW | ncwW | ncWW | cWw | cWW | ||
| 5 | IL_8DP3_002 | 8DP3 | 0.2051 | 0 | Triple non-canonical cWW pairs | R | RNA (90-MER) | C | 71 | U | 72 | U | 73 | U | 74 | G | 75 | * | C | 54 | U | 55 | C | 56 | U | 57 | G | 58 | cWW | ncWW | cwW | cWW | cWw | cWW | |
| 6 | IL_5BTM_001 | 5BTM | 0.0000 | 0 | Triple non-canonical cWW pairs | A | RNA (55-mer) | U | 10 | U | 11 | C | 12 | U | 13 | A | 14 | * | U | 42 | U | 43 | C | 44 | U | 45 | A | 46 | cWW | ncWW | cwW | ncWw | cwW | cWW | |
| 7 | IL_8S95_002 | 8S95 | 0.2193 | 0 | Triple non-canonical cWW pairs | C | Lysine tRNA scaffold,Poliovirus cloverleaf RNA | C | 84 | U | 85 | C | 86 | C | 87 | G | 88 | * | C | 101 | C | 102 | U | 103 | U | 104 | G | 105 | cWW | ncwW | cWW | ncWw | cWW | ||
| 8 | IL_4WF9_084 | 4WF9 | 0.4314 | 0 | Other IL | X | LSU rRNA | A | 2122 | A | 2123 | U | 2124 | U | 2125 | C | 2126 | * | G | 2217 | G | 2218 | C | 2219 | U | 2220 | U | 2221 | cWW | ncWW | ncWW | cWW | |||
| 9 | IL_5XTM_006 | 5XTM | 0.9291 | 2 | D | RNA (47-MER) | U | 35 | A | 36 | A | 37 | C | 38 | C | 39 | * | G | 8 | A | 9 | U | 10 | A | 13 | A | 14 | cWW | cwW | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUUG*CUCUG | 2 |
| CACAC*GCGUG | 1 |
| GGAUG*UUAUC | 1 |
| CUUGG*CCUUG | 1 |
| UUCUA*UUCUA | 1 |
| CUCCG*CCUUG | 1 |
| AAUUC*GGCUU | 1 |
| UAACC*GAUGAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUU*UCU | 2 |
| ACA*CGU | 1 |
| GAU*UAU | 1 |
| UUG*CUU | 1 |
| UCU*UCU | 1 |
| UCC*CUU | 1 |
| AUU*GCU | 1 |
| AAC*AUGAA | 1 |
- Annotations
-
- Triple non-canonical cWW pairs (4)
- (3)
- Other IL (1)
- Partly complementary (1)
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.44 | Max 0.95
Coloring options: