Motif IL_05564.1 Version IL_05564.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-4 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7D81_002 | 7D81 | 0.5652 | 1 | A | nadA RNA | G | 33 | G | 34 | U | 35 | G | 37 | * | C | 22 | G | 23 | C | 24 | cWW | ncwW | cWW | ||||
| 2 | IL_4V88_397 | 4V88 | 0.3035 | 1 | Major groove platform with extra cWW | A6 | SSU rRNA | U | 259 | U | 261 | U | 262 | C | 263 | * | G | 204 | U | 205 | A | 206 | cWW | cSH | cWw | cWW | ||
| 3 | IL_4V9F_028 | 4V9F | 0.3055 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | G | 830 | U | 831 | U | 832 | G | 833 | * | C | 849 | U | 850 | C | 851 | cWW | cSH | cWw | cWW | ||
| 4 | IL_5TBW_031 | 5TBW | 0.2926 | 0 | Major groove platform with extra cWW | 1 | LSU rRNA | G | 869 | G | 870 | U | 871 | U | 872 | * | A | 888 | U | 889 | C | 890 | cWW | cSH | cWw | cWW | ||
| 5 | IL_7RQB_022 | 7RQB | 0.2851 | 0 | Major groove platform with extra cWW | 1A | LSU rRNA | G | 738 | G | 739 | U | 740 | G | 741 | * | C | 756 | U | 757 | C | 758 | cWW | cSH | cWw | cWW | ||
| 6 | IL_7A0S_019 | 7A0S | 0.2535 | 0 | Major groove platform with extra cWW | X | LSU rRNA | G | 751 | G | 752 | U | 753 | G | 754 | * | C | 769 | U | 770 | C | 771 | cWW | cSH | cWw | cWW | ||
| 7 | IL_1MMS_002 | 1MMS | 0.0852 | 1 | Major groove platform with extra cWW | C | 23S RIBOSOMAL RNA | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW | ||
| 8 | IL_5D8H_003 | 5D8H | 0.0000 | 1 | Major groove platform with extra cWW | A | LSU rRNA | G | 1197 | G | 1199 | U | 1200 | G | 1201 | * | C | 1210 | U | 1211 | C | 1212 | cWW | cSH | cWw | cWW | ||
| 9 | IL_5TBW_056 | 5TBW | 0.2843 | 1 | Major groove platform with extra cWW | 1 | LSU rRNA | G | 1262 | G | 1264 | U | 1265 | G | 1266 | * | C | 1275 | U | 1276 | C | 1277 | cWW | ncSH | cWw | ncWW | ||
| 10 | IL_6CZR_136 | 6CZR | 0.3541 | 0 | 1a | SSU rRNA | G | 578 | G | 579 | C | 580 | G | 581 | * | C | 627 | G | 628 | C | 629 | cWW | ntSH | ncWW | cWW | |||
| 11 | IL_4RUM_002 | 4RUM | 0.8964 | 1 | A | NiCo riboswitch RNA | U | 38 | G | 39 | C | 40 | G | 42 | * | C | 20 | A | 21 | A | 22 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUG*CUC | 3 |
| GGUG*CUC | 2 |
| GGUGG*CGC | 1 |
| UUUUC*GUA | 1 |
| GUUG*CUC | 1 |
| GGUU*AUC | 1 |
| GGCG*CGC | 1 |
| UGCAG*CAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU*U | 3 |
| AGU*U | 3 |
| GUG*G | 1 |
| UUU*U | 1 |
| UU*U | 1 |
| GC*G | 1 |
| GCA*A | 1 |
- Annotations
-
- Major groove platform with extra cWW (8)
- (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.38 | Max 0.95
Coloring options: