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Motif IL_05642.1 Version IL_05642.1 of this group appears in releases 4.0 to 4.0

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-53-4
1 IL_7A0S_0257A0S1.30760Single bulged CX LSU rRNAG938C939G940*C863C864cWWncWW
2 IL_9E6Q_0389E6Q1.42580Minor groove platform (H)1 LSU rRNAU1032C1033C1034*G981A982cWWcWW
3 IL_8GLP_0238GLP0.91910L5 LSU rRNAG448C449G450*U1297C1298cWWcWW
4 IL_8GLP_1368GLP0.75450L5 LSU rRNAG4095C4096G4097*C4112U4113cWWcWW
5 IL_8B0X_1308B0X0.58470a LSU rRNAG1733C1734G1735*C1729C1730cWWcWW
6 IL_7A0S_0107A0S0.77300Single bulged CX LSU rRNAG558C559G560*C552C553cWWcWW
7 IL_8GLP_2698GLP0.61760S2 SSU rRNAG1422C1423G1424*C1416C1417cWWcWW
8 IL_8GLP_0558GLP0.68420L5 LSU rRNAG1484C1485C1486*G1479C1480cWWcWW
9 IL_8CRE_3908CRE0.65670Single bulged C (H)CM SSU rRNAU24C25A26*U598A599cWWcWW
10 IL_8P9A_3738P9A0.56990Single bulged CsR SSU rRNAU24C25A26*U600A601cWWcWW
11 IL_8GLP_0788GLP0.77760L5 LSU rRNAC1920C1921G1922*C2062G2063cWWcWW
12 IL_8GLP_1658GLP0.68040L5 LSU rRNAG4740C4741G4742*C4958U4959cWWcWW
13 IL_3DIL_0013DIL0.61510Single bulged CARNA (174-MER)G12C13G14*C78C79cWWcWW
14 IL_3D0U_0013D0U0.73330Single bulged CALysine Riboswitch RNAG9C10G11*C75C76cWWcWW
15 IL_8GLP_0248GLP0.62580L5 LSU rRNAG695C696G697*C459C460cWWcWW
16 IL_8QYX_1658QYX0.70420Single bulged A (H)B2 5S rRNAU62C63G64*C15A16cWWcWW
17 IL_8GLP_0448GLP0.56110L5 LSU rRNAU1209C1210G1211*C1086A1087cWWcWW
18 IL_9E6Q_0839E6Q0.651101 LSU rRNAG2516C2517C2518*G2532C2533cWWcWW
19 IL_8P9A_2978P9A0.53580Single bulged CAR LSU rRNAG1778C1779G1780*C1669C1670cWWcWW
20 IL_8OI5_0718OI50.47310Single bulged C (H)1 LSU rRNAG1774C1775G1776*C1665C1666cWWcWW
21 IL_9AXU_0659AXU0.47530Single bulged C (H)2 LSU rRNAG1819C1820G1821*C1704C1705cWWcWW
22 IL_3SNP_0033SNP0.62550Single bulged CDferritin H IRE RNAG7C8U9*A24C25cWWcWW
23 IL_7A0S_0557A0S0.51290Single bulged CX LSU rRNAG1488C1489U1490*A1534C1535cWWcWW
24 IL_6CK5_0036CK50.52890Single bulged CAGuanidine-I riboswitchU39C40G41*C21A22cWWcWW
25 IL_3HHN_0033HHN0.37840Single bulged CEClass I ligase ribozyme, self-ligation productG46C47U48*A112C113cWWcWW
26 IL_8F5G_0028F5G0.43340Single bulged CDRNAG8C9U10*A19C20cWWcWW
27 IL_3IVK_0013IVK0.46470Single bulged CMclass I ligase productG46C47U48*A112C113ncWWcWW
28 IL_9DE7_0019DE70.40870ARNA (58-MER)U4C5U6*A55A56cWWcWW
29 IL_7A0S_0327A0S0.12650Single bulged CX LSU rRNAU1005C1006A1007*U1170A1171cWWcWW
30 IL_9DFE_0349DFE0.00000Single bulged C1A LSU rRNAC994C995A996*U1159G1160cWWcWW
31 IL_8B0X_0968B0X0.11910Single bulged C (H)a LSU rRNAC996C997A998*U1161G1162cWWcWW
32 IL_4WF9_0354WF90.17040Single bulged CX LSU rRNAC1038C1039A1040*U1203G1204cWWcWW
33 IL_8GLP_0018GLP0.31190Single bulged C (H)L8+L5 5.8S rRNAG149C150G151*C6C7cWWcWW
34 IL_1S03_0061S030.29710Single bulged CB47-MERG9C10G11*C39C40cWWcWW
35 IL_8GLP_1728GLP0.42730L5 LSU rRNAG4899C4900G4901*C4920C4921cWWcWW
36 IL_8GLP_0158GLP0.45600L5 LSU rRNAG244C245G246*C195C196cWWcWW
37 IL_8GLP_0098GLP0.34270L5 LSU rRNAG142C143G144*C125C126cWWcWW
38 IL_7PMM_0017PMM0.40220Single bulged CDRNA (45mer) containing HP92 of the 23S rRNAU33C34G35*C13A14cWWcWW
39 IL_1S03_0021S030.44580Single bulged CA47-MERG9C10G11*C39C40cWWcWW
40 IL_9M86_0049M860.34810DRNA (31-MER)A72C73U74*A50U51cWWcWW
41 IL_6XKO_0016XKO0.37900Single bulged CAPreQ1-III riboswitchG78C79G80*C56C57cWWcWW
42 IL_8GLP_1788GLP0.43540Single bulged U (H)L5 LSU rRNAG5012C5013A5014*U5035C5036cWWcWW
43 IL_8P9A_2318P9A0.74330Single bulged CAT+AR 5.8S rRNAG150C151G152*C7C8cWWcWW
44 IL_8OI5_0028OI50.75210Single bulged C (H)4+1 5.8S rRNAG150C151G152*C6C7cWWcWW
45 IL_8OI5_1428OI50.80710Single bulged C (H)4 5.8S rRNAU90C91A92*U67A68cWWcWW
46 IL_9E6Q_0479E6Q0.92950Single bulged G (H)1 LSU rRNAG1158C1159G1160*C1247C1248cWWcWW
47 IL_8GLP_0838GLP0.95760L5 LSU rRNAC2083C2084G2085*C2272G2273cWWcWW
48 IL_1KUQ_0021KUQ1.00630Single bulged CB16S RIBOSOMAL RNA FRAGMENTC46C47C48*G21G22cWWcWW
49 IL_9DFE_1079DFE1.45630Major groove intercalation1A LSU rRNAU2878C2879C2880*G2838G2839cWWcWW
50 IL_8GLP_1748GLP1.59240L5 LSU rRNAU5053C5054G5055*C4996G4997cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCG*CC20
GCU*AC5
UCA*UA4
UCG*CA4
CCA*UG3
GCG*CU2
GCC*GC2
CCG*CG2
UCC*GA1
GCG*UC1
UCU*AA1
ACU*AU1
GCA*UC1
CCC*GG1
UCC*GG1
UCG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
C*50

Release history

Release4.0
Date2025-08-13
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single bulged C (21)
  • (17)
  • Single bulged C (H) (7)
  • Single bulged U (H) (1)
  • Single bulged A (H) (1)
  • Major groove intercalation (1)
  • Minor groove platform (H) (1)
  • Single bulged G (H) (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.81 | Max 1.98
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