Motif IL_06413.1 Version IL_06413.1 of this group appears in releases 1.15 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3ZP8_001 | 3ZP8 | 0.0000 | 0 | A+B | HAMMERHEAD RIBOZYME, ENZYME STRAND + HAMMERHEAD RIBOZYME, SUBSTRATE STRAND | A | 3 | U | 4 | G | 5 | * | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | cWW | cWW | cWW |
| 2 | IL_4A1B_119 | 4A1B | 0.9420 | 1 | 1 | 26S RRNA | A | 3080 | C | 3082 | A | 3083 | * | U | 3036 | A | 3037 | A | 3038 | U | 3039 | U | 3040 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUG*CCAAU | 1 |
| ACCA*UAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*CAA | 1 |
| CC*AAU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_06413.1 | Only in the parent motif |
|---|---|---|---|
| IL_74856.1 Compare | IL_3ZP8_001 | IL_4A1B_119 | IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076 |
| IL_64213.1 Compare | IL_4A1B_119 | IL_3ZP8_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_06413.1 | Only in the child motif |
|---|---|---|---|
| IL_21577.1 Compare | IL_4A1B_119 | IL_3ZP8_001 | |
| IL_22611.1 Compare | IL_3ZP8_001 | IL_4A1B_119 | IL_4PDB_001 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
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