#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6 7 81-82-52-73-43-63-75-7
1 IL_2QBG_0932QBG0.35850B23S rRNAA2459U2460A2461*U2489G2490U2491U2492U2493cWWcwWcWWncSH
2 IL_4IOA_0884IOA0.11960Major groove minor groove platform with extra cWW (H)X LSU rRNAA2438U2439C2440*G2468G2469U2470U2471U2472cWWcwWcWWcSH
3 IL_4NVV_0904NVV0.00000A23S Ribosomal RNAA2471U2472C2473*G2501G2502U2503U2504U2505cWWcwWcWWncSH
4 IL_1VW3_0761VW30.13940A21S ribosomal RNAA2725U2726A2727*U2755G2756U2757U2758U2759cWWcwWcWWcSH
5 IL_2XXA_0092XXA0.69710G SSRP RNAG10U11G12*C89C90U91U92C93cWWcWWntSH
6 IL_3ZP8_0013ZP80.71180A+BHAMMERHEAD RIBOZYME, ENZYME STRAND + HAMMERHEAD RIBOZYME, SUBSTRATE STRANDA3U4G5*C14C15A16A17U18cWWcWWcWW
7 IL_4BPP_0714BPP0.65262A18S RRNAA1317A1320G1321*C1346U1347U1348C1349U1350cWWcWWcWWntSHncSWcSH
8 IL_4GMA_0074GMA0.84330ZAdenosylcobalamin riboswitchC113A114C115*G128G129A130A131G132cWWcWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
AUA*UGUUU2
AUC*GGUUU2
GUG*CCUUC1
AUG*CCAAU1
ACUAG*CUUCU1
CAC*GGAAG1
Non-Watson-Crick part of the motif
SequenceCounts
U*GUU4
U*CUU1
U*CAA1
CUA*UUC1
A*GAA1
Annotations
  • (7)
  • Major groove minor groove platform with extra cWW (H) (1)
  • Basepair signature
    cWW-cWW-cSH-R-cWW
    Heat map statistics
    Min 0.12 | Avg 0.57 | Max 0.98
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