Motif IL_74856.1 Version IL_74856.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 3-7 | 5-7 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBG_093 | 2QBG | 0.3585 | 0 | B | 23S rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | ncSH | ||||
2 | IL_4IOA_088 | 4IOA | 0.1196 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | |||
3 | IL_4NVV_090 | 4NVV | 0.0000 | 0 | A | 23S Ribosomal RNA | A | 2471 | U | 2472 | C | 2473 | * | G | 2501 | G | 2502 | U | 2503 | U | 2504 | U | 2505 | cWW | cwW | cWW | ncSH | ||||
4 | IL_1VW3_076 | 1VW3 | 0.1394 | 0 | A | 21S ribosomal RNA | A | 2725 | U | 2726 | A | 2727 | * | U | 2755 | G | 2756 | U | 2757 | U | 2758 | U | 2759 | cWW | cwW | cWW | cSH | ||||
5 | IL_2XXA_009 | 2XXA | 0.6971 | 0 | G | SSRP RNA | G | 10 | U | 11 | G | 12 | * | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | cWW | cWW | ntSH | |||||
6 | IL_3ZP8_001 | 3ZP8 | 0.7118 | 0 | A+B | HAMMERHEAD RIBOZYME, ENZYME STRAND + HAMMERHEAD RIBOZYME, SUBSTRATE STRAND | A | 3 | U | 4 | G | 5 | * | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | cWW | cWW | cWW | |||||
7 | IL_4BPP_071 | 4BPP | 0.6526 | 2 | A | 18S RRNA | A | 1317 | A | 1320 | G | 1321 | * | C | 1346 | U | 1347 | U | 1348 | C | 1349 | U | 1350 | cWW | cWW | cWW | ntSH | ncSW | cSH | ||
8 | IL_4GMA_007 | 4GMA | 0.8433 | 0 | Z | Adenosylcobalamin riboswitch | C | 113 | A | 114 | C | 115 | * | G | 128 | G | 129 | A | 130 | A | 131 | G | 132 | cWW | cWW | ntSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUA*UGUUU | 2 |
AUC*GGUUU | 2 |
GUG*CCUUC | 1 |
AUG*CCAAU | 1 |
ACUAG*CUUCU | 1 |
CAC*GGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U*GUU | 4 |
U*CUU | 1 |
U*CAA | 1 |
CUA*UUC | 1 |
A*GAA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_74856.1 | Only in the parent motif |
---|---|---|---|
IL_25380.1 Compare | IL_4GMA_007, IL_2QBG_093, IL_2XXA_009, IL_4IOA_088, IL_4BPP_071 | IL_3ZP8_001, IL_1VW3_076, IL_4NVV_090 | IL_4GXY_009 |
IL_57364.1 Compare | IL_3ZP8_001 | IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076 |
Children motifs
Child motif | Common motif instances | Only in IL_74856.1 | Only in the child motif |
---|---|---|---|
IL_74856.2 Compare | IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076 | IL_3ZP8_001 | IL_4GXY_009 |
IL_06413.1 Compare | IL_3ZP8_001 | IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076 | IL_4A1B_119 |
- Annotations
-
- (7)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.12 | Avg 0.57 | Max 0.98
Coloring options: