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Motif IL_06437.10 Version IL_06437.10 of this group appears in releases 3.58 to 3.61

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_4LFB_0454LFB0.64702Minor groove platformA SSU rRNAU1199G1202C1203*G1057G1058cWWtHScWW
2 IL_5J7L_0485J7L0.61642Minor groove platformAA SSU rRNAU1199U1202C1203*G1057G1058cWWtHScWW
3 IL_6CZR_1166CZR0.65470Minor groove platform1a SSU rRNAC55A56U57*A352G353cWWntHScWW
4 IL_5J7L_0045J7L0.59910Minor groove platformAA SSU rRNAC54A55U56*A356G357cWWtHScWW
5 IL_4LFB_0044LFB0.58000Minor groove platformA SSU rRNAC54A55U56*A356G357cWWtHScWW
6 IL_4V88_3884V880.53390Minor groove platformA6 SSU rRNAC50A51U52*A428G429cWWtHScWW
7 IL_4LFB_0544LFB0.58730Minor groove platformA SSU rRNAC1260A1261C1262*G1273G1274ncWWtHScWW
8 IL_4UYK_0014UYK0.52710Minor groove platformRSRP RNAC122A123C124*G77G78tHScWW
9 IL_5J7L_3145J7L0.73531Minor groove platform, major groove intercalationDA LSU rRNAC1837G1839G1840*C1902G1903cWWntHScWW
10 IL_4V88_4544V880.45360Minor groove platformA6 SSU rRNAC1306U1307G1308*C1317G1318cSHcWWtHScWW
11 IL_7RQB_0737RQB0.52411Minor groove platform1A LSU rRNAG1846A1848G1849*C1893C1894cWWncWScWW
12 IL_7KGA_0067KGA0.55830Single stack bendBFlavivirus DB elementA37C38U39*A15U16cWWcWW
13 IL_7A0S_0037A0S0.33840Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
14 IL_7RQB_0037RQB0.35700Minor groove platform1A LSU rRNAU434C435C436*G42A43cSHcWWcWW
15 IL_5J7L_2475J7L0.25790Minor groove platformDA LSU rRNAU434C435C436*G43A44cSHcWWcWW
16 IL_7RQB_0287RQB0.16370Minor groove platform1A LSU rRNAU913C914C915*G862A863cSHcWWcWW
17 IL_4V9F_0344V9F0.11450Minor groove platform0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
18 IL_4WF9_0324WF90.11150Minor groove platformX LSU rRNAU958C959C960*G907A908cSHcWWcWW
19 IL_7A0S_0287A0S0.00000Minor groove platformX LSU rRNAU925C926C927*G875A876ncSHcWWcWW
20 IL_5J7L_3245J7L0.16731Minor groove platformDA LSU rRNAU2438C2440U2441*A2070A2071cSHcWWcWW
21 IL_5TBW_0945TBW0.20341Minor groove platform1 LSU rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
22 IL_7RQB_0817RQB0.19411Minor groove platform1A LSU rRNAU2438C2440C2441*G2070A2071cSHcWWcWW
23 IL_4V9F_0754V9F0.18281Minor groove platform0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
24 IL_4WF9_0814WF90.20571Minor groove platformX LSU rRNAU2465C2467C2468*G2097A2098cSHcWWcWW
25 IL_7A0S_0767A0S0.19971Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
26 IL_1U6B_0071U6B0.22000Minor groove platformB197-MERG128A129G130*C177C178cSHcWWtHScWW
27 IL_6DTD_0036DTD0.21470Minor groove platformCRNA (37-MER)G22A23A24*U15C16cSHcWWtHScWW
28 IL_4LFB_0384LFB0.26700Minor groove platformA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
29 IL_5J7L_0425J7L0.33340Minor groove platformAA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
30 IL_5ML7_0095ML70.34960Minor groove platformB23S ribosomal RNAC2177A2178G2179*C2201G2202cWWtHScWW
31 IL_2QWY_0092QWY0.29950Minor groove platformCSAM-II riboswitchU40A41G42*C23A24cWWtHScWW
32 IL_5T83_0035T830.32760Minor groove platformAGuanidine-I riboswitchC36U37G38*C21G22ncSHcWWntHScWW
33 IL_6DLR_0036DLR0.27020Minor groove platformAGuanidine-I riboswitchC39U40G41*C21G22cSHcWWtHScWW
34 IL_5TBW_0395TBW0.27180Minor groove platform1 LSU rRNAU1050U1051U1052*A997A998ncSHcWWtHScWW
35 IL_4V88_4124V880.22450Minor groove platformA6 SSU rRNAA518C519A520*U532U533cWWntHScWW
36 IL_5VSU_0035VSU0.37900Single stack bendI U6 snRNAA75A76G77*C69U70cWWcWW
37 IL_3RW6_0013RW60.52351Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAU53A55U56*A7A8ncSHcWWcWW
38 IL_7TZS_0037TZS0.40000Minor groove platform relatedXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
39 IL_3K0J_0023K0J0.43210Minor groove platform relatedERNA (87-MER)C18C19U20*A35G36ncSHcWWcWW
40 IL_5J7L_0645J7L0.56190Single bulged AAA SSU rRNAU1440A1441G1442*C1460G1461cWWcWW
41 IL_3IWN_0013IWN0.44290Minor groove platformAC-di-GMP riboswitchG89A90U91*A2C3ncWWcWW
42 IL_4R4V_0074R4V0.48930Minor groove platformAVS ribozyme RNAU777||||7_556U778||||7_556A779||||7_556*U607||||7_556G608||||7_556cWWcWW
43 IL_4R4V_0014R4V0.48930Minor groove platformAVS ribozyme RNAU777U778A779*U607G608cWWcWW
44 IL_4V9F_0324V9F0.72110Single bulged A0 LSU rRNAU942A943G944*C1023G1024cWWcWW
45 IL_4V88_4454V880.56110Minor groove platformA6 SSU rRNAC1459A1460C1461*G1178G1179cWWcWW
46 IL_7RQB_0327RQB0.78320Minor groove platform1A LSU rRNAU877A878G879*C898A899cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCC*GA7
CAC*GG5
UACC*GA5
CAU*AG4
CUG*CG3
UAG*CA2
CCU*AG2
UAG*CG2
UUA*UG2
UCAGC*GG1
UCAUC*GG1
CCGG*CG1
GAAG*CC1
ACU*AU1
UACU*AA1
GAG*CC1
GAA*UC1
CAG*CG1
UUU*AA1
ACA*UU1
AAG*CU1
UAAU*AA1
GAU*AC1
Non-Watson-Crick part of the motif
SequenceCounts
A*18
C*11
U*6
AC*6
AA*2
CAG*1
CAU*1
CG*1

Release history

Release3.583.593.603.61
Date2022-05-252022-06-222022-07-202022-08-17
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (39)
  • Minor groove platform related (2)
  • Single bulged A (2)
  • Single stack bend (2)
  • Minor groove platform, major groove intercalation (1)
    • Basepair signature
    cWW-cSH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.52 | Max 0.99
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