IL_06437.11

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_4LFB_045	4LFB	0.6470	2	Minor groove platform	A	SSU rRNA	U	1199	G	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
2	IL_5J7L_048	5J7L	0.6164	2	Minor groove platform	AA	SSU rRNA	U	1199	U	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
3	IL_6CZR_116	6CZR	0.6547	0	Minor groove platform	1a	SSU rRNA	C	55	A	56	U	57	*	A	352	G	353		cWW	ntHS	cWW
4	IL_5J7L_004	5J7L	0.5991	0	Minor groove platform	AA	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
5	IL_4LFB_004	4LFB	0.5800	0	Minor groove platform	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
6	IL_4V88_388	4V88	0.5339	0	Minor groove platform	A6	SSU rRNA	C	50	A	51	U	52	*	A	428	G	429		cWW	tHS	cWW
7	IL_4LFB_054	4LFB	0.5873	0	Minor groove platform	A	SSU rRNA	C	1260	A	1261	C	1262	*	G	1273	G	1274		ncWW	tHS	cWW
8	IL_4UYK_001	4UYK	0.5271	0	Minor groove platform	R	SRP RNA	C	122	A	123	C	124	*	G	77	G	78			tHS	cWW
9	IL_5J7L_314	5J7L	0.7353	1	Minor groove platform, major groove intercalation	DA	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903		cWW	ntHS	cWW
10	IL_4V88_454	4V88	0.4536	0	Minor groove platform	A6	SSU rRNA	C	1306	U	1307	G	1308	*	C	1317	G	1318	cSH	cWW	tHS	cWW
11	IL_7RQB_073	7RQB	0.5241	1	Minor groove platform	1A	LSU rRNA	G	1846	A	1848	G	1849	*	C	1893	C	1894		cWW	ncWS	cWW
12	IL_7KGA_006	7KGA	0.5583	0	Single stack bend	B	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16		cWW		cWW
13	IL_7A0S_003	7A0S	0.3384	0	Minor groove platform	X	LSU rRNA	U	447	C	448	C	449	*	G	42	A	43	cSH	cWW		cWW
14	IL_7RQB_003	7RQB	0.3570	0	Minor groove platform	1A	LSU rRNA	U	434	C	435	C	436	*	G	42	A	43	cSH	cWW		cWW
15	IL_5J7L_247	5J7L	0.2579	0	Minor groove platform	DA	LSU rRNA	U	434	C	435	C	436	*	G	43	A	44	cSH	cWW		cWW
16	IL_7RQB_028	7RQB	0.1637	0	Minor groove platform	1A	LSU rRNA	U	913	C	914	C	915	*	G	862	A	863	cSH	cWW		cWW
17	IL_4V9F_034	4V9F	0.1145	0	Minor groove platform	0	LSU rRNA	U	1009	C	1010	C	1011	*	G	956	A	957	cSH	cWW		cWW
18	IL_4WF9_032	4WF9	0.1115	0	Minor groove platform	X	LSU rRNA	U	958	C	959	C	960	*	G	907	A	908	cSH	cWW		cWW
19	IL_7A0S_028	7A0S	0.0000	0	Minor groove platform	X	LSU rRNA	U	925	C	926	C	927	*	G	875	A	876	ncSH	cWW		cWW
20	IL_5J7L_324	5J7L	0.1673	1	Minor groove platform	DA	LSU rRNA	U	2438	C	2440	U	2441	*	A	2070	A	2071	cSH	cWW		cWW
21	IL_5TBW_094	5TBW	0.2034	1	Minor groove platform	1	LSU rRNA	U	2807	C	2809	C	2810	*	G	2412	A	2413	cSH	cWW		cWW
22	IL_7RQB_081	7RQB	0.1941	1	Minor groove platform	1A	LSU rRNA	U	2438	C	2440	C	2441	*	G	2070	A	2071	cSH	cWW		cWW
23	IL_4V9F_075	4V9F	0.1828	1	Minor groove platform	0	LSU rRNA	U	2473	C	2475	C	2476	*	G	2111	A	2112	cSH	cWW		cWW
24	IL_4WF9_081	4WF9	0.2057	1	Minor groove platform	X	LSU rRNA	U	2465	C	2467	C	2468	*	G	2097	A	2098	cSH	cWW		cWW
25	IL_7A0S_076	7A0S	0.1997	1	Minor groove platform	X	LSU rRNA	U	2417	C	2419	C	2420	*	G	2053	A	2054	cSH	cWW		cWW
26	IL_1U6B_007	1U6B	0.2200	0	Minor groove platform	B	197-MER	G	128	A	129	G	130	*	C	177	C	178	cSH	cWW	tHS	cWW
27	IL_6DTD_003	6DTD	0.2147	0	Minor groove platform	C	RNA (37-MER)	G	22	A	23	A	24	*	U	15	C	16	cSH	cWW	tHS	cWW
28	IL_4LFB_038	4LFB	0.2670	0	Minor groove platform	A	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW	ntHS	cWW
29	IL_5J7L_042	5J7L	0.3334	0	Minor groove platform	AA	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW	ntHS	cWW
30	IL_5ML7_009	5ML7	0.3496	0	Minor groove platform	B	23S ribosomal RNA	C	2177	A	2178	G	2179	*	C	2201	G	2202		cWW	tHS	cWW
31	IL_2QWY_009	2QWY	0.2995	0	Minor groove platform	C	SAM-II riboswitch	U	40	A	41	G	42	*	C	23	A	24		cWW	tHS	cWW
32	IL_5T83_003	5T83	0.3276	0	Minor groove platform	A	Guanidine-I riboswitch	C	36	U	37	G	38	*	C	21	G	22	ncSH	cWW	ntHS	cWW
33	IL_6DLR_003	6DLR	0.2702	0	Minor groove platform	A	Guanidine-I riboswitch	C	39	U	40	G	41	*	C	21	G	22	cSH	cWW	tHS	cWW
34	IL_5TBW_039	5TBW	0.2718	0	Minor groove platform	1	LSU rRNA	U	1050	U	1051	U	1052	*	A	997	A	998	ncSH	cWW	tHS	cWW
35	IL_4V88_412	4V88	0.2245	0	Minor groove platform	A6	SSU rRNA	A	518	C	519	A	520	*	U	532	U	533		cWW	ntHS	cWW
36	IL_5VSU_003	5VSU	0.3790	0	Single stack bend	I	U6 snRNA	A	75	A	76	G	77	*	C	69	U	70		cWW		cWW
37	IL_3RW6_001	3RW6	0.5235	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	53	A	55	U	56	*	A	7	A	8	ncSH	cWW		cWW
38	IL_7TZS_003	7TZS	0.4000	0	Minor groove platform related	X	TPP riboswitch (THI element)	C	23	C	24	U	25	*	A	35	G	36	ncSH	cWW		cWW
39	IL_3K0J_002	3K0J	0.4321	0	Minor groove platform related	E	RNA (87-MER)	C	18	C	19	U	20	*	A	35	G	36	ncSH	cWW		cWW
40	IL_5J7L_064	5J7L	0.5619	0	Single bulged A	AA	SSU rRNA	U	1440	A	1441	G	1442	*	C	1460	G	1461		cWW		cWW
41	IL_3IWN_001	3IWN	0.4429	0	Minor groove platform	A	C-di-GMP riboswitch	G	89	A	90	U	91	*	A	2	C	3		ncWW		cWW
42	IL_4R4V_001	4R4V	0.4893	0	Minor groove platform	A	VS ribozyme RNA	U	777	U	778	A	779	*	U	607	G	608		cWW		cWW
43	IL_4V9F_032	4V9F	0.7211	0	Single bulged A	0	LSU rRNA	U	942	A	943	G	944	*	C	1023	G	1024		cWW		cWW
44	IL_4V88_445	4V88	0.5611	0	Minor groove platform	A6	SSU rRNA	C	1459	A	1460	C	1461	*	G	1178	G	1179		cWW		cWW
45	IL_7RQB_032	7RQB	0.7832	0	Minor groove platform	1A	LSU rRNA	U	877	A	878	G	879	*	C	898	A	899		cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCC*GA	7
CAC*GG	5
UACC*GA	5
CAU*AG	4
CUG*CG	3
UAG*CA	2
CCU*AG	2
UAG*CG	2
UCAGC*GG	1
UCAUC*GG	1
CCGG*CG	1
GAAG*CC	1
ACU*AU	1
UACU*AA	1
GAG*CC	1
GAA*UC	1
CAG*CG	1
UUU*AA	1
ACA*UU	1
AAG*CU	1
UAAU*AA	1
GAU*AC	1
UUA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	18
C*	11
AC*	6
U*	5
AA*	2
CAG*	1
CAU*	1
CG*	1

Release history

Release	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_06437.11 Version IL_06437.11 of this group appears in releases 3.62 to 3.76 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_06437.11 Version IL_06437.11 of this group appears in releases 3.62 to 3.76

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Csv

Json