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Motif IL_06437.8 Version IL_06437.8 of this group appears in releases 3.48 to 3.53

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-32-43-4
1 IL_4LFB_0454LFB0.64702Minor groove platformA SSU rRNAG1057G1058*U1199G1202C1203cWWcWWtSH
2 IL_5J7L_0485J7L0.61642Minor groove platformAA SSU rRNAG1057G1058*U1199U1202C1203cWWcWWtSH
3 IL_6CZR_1166CZR0.65470Minor groove platform1a SSU rRNAA352G353*C55A56U57cWWcWWntSH
4 IL_5J7L_0045J7L0.59910Minor groove platformAA SSU rRNAA356G357*C54A55U56cWWcWWtSH
5 IL_4LFB_0044LFB0.58000Minor groove platformA SSU rRNAA356G357*C54A55U56cWWcWWtSH
6 IL_4V88_3884V880.53390Minor groove platformA6 SSU rRNAA428G429*C50A51U52cWWcWWtSH
7 IL_4LFB_0544LFB0.58730Minor groove platformA SSU rRNAG1273G1274*C1260A1261C1262cWWncWWtSH
8 IL_4UYK_0014UYK0.52710Minor groove platformRSRP RNAG77G78*C122A123C124cWWtSH
9 IL_5J7L_3145J7L0.73531Minor groove platform, major groove intercalationDA LSU rRNAC1902G1903*C1837G1839G1840cWWcWWntSH
10 IL_4V88_4544V880.45360Minor groove platformA6 SSU rRNAC1317G1318*C1306U1307G1308cWWcWWtSHcSH
11 IL_4Y4O_2464Y4O0.53021Minor groove platform2A LSU rRNAC1893C1894*G1846A1848G1849cWWcWWncSW
12 IL_7KGA_0067KGA0.55830Single stack bendBFlavivirus DB elementA15U16*A37C38U39cWWcWW
13 IL_7A0S_0037A0S0.33840Minor groove platformX LSU rRNAG42A43*U447C448C449cWWcWWcSH
14 IL_4Y4O_1814Y4O0.34510Minor groove platform2A LSU rRNAG42A43*U434C435C436cWWcWWcSH
15 IL_5J7L_2475J7L0.25790Minor groove platformDA LSU rRNAG43A44*U434C435C436cWWcWWcSH
16 IL_4Y4O_2054Y4O0.16100Minor groove platform2A LSU rRNAG862A863*U913C914C915cWWcWWcSH
17 IL_4V9F_0344V9F0.11450Minor groove platform0 LSU rRNAG956A957*U1009C1010C1011cWWcWWcSH
18 IL_4WF9_0324WF90.11150Minor groove platformX LSU rRNAG907A908*U958C959C960cWWcWWcSH
19 IL_7A0S_0287A0S0.00000Minor groove platformX LSU rRNAG875A876*U925C926C927cWWcWWncSH
20 IL_5J7L_3245J7L0.16731Minor groove platformDA LSU rRNAA2070A2071*U2438C2440U2441cWWcWWcSH
21 IL_5TBW_0945TBW0.20341Minor groove platform1 LSU rRNAG2412A2413*U2807C2809C2810cWWcWWcSH
22 IL_4Y4O_2544Y4O0.16611Minor groove platform2A LSU rRNAG2070A2071*U2438C2440C2441cWWcWWcSH
23 IL_4V9F_0754V9F0.18281Minor groove platform0 LSU rRNAG2111A2112*U2473C2475C2476cWWcWWcSH
24 IL_4WF9_0814WF90.20571Minor groove platformX LSU rRNAG2097A2098*U2465C2467C2468cWWcWWcSH
25 IL_7A0S_0767A0S0.19971Minor groove platformX LSU rRNAG2053A2054*U2417C2419C2420cWWcWWcSH
26 IL_1U6B_0071U6B0.22000Minor groove platformB197-MERC177C178*G128A129G130cWWcWWtSHcSH
27 IL_6DTD_0036DTD0.21470Minor groove platformCRNA (37-MER)U15C16*G22A23A24cWWcWWtSHcSH
28 IL_4LFB_0384LFB0.26700Minor groove platformA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
29 IL_5J7L_0425J7L0.33340Minor groove platformAA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
30 IL_5ML7_0095ML70.34960Minor groove platformB23S ribosomal RNAC2201G2202*C2177A2178G2179cWWcWWtSH
31 IL_2QWY_0092QWY0.29950Minor groove platformCSAM-II riboswitchC23A24*U40A41G42cWWcWWtSH
32 IL_5T83_0035T830.32760Minor groove platformAGuanidine-I riboswitchC21G22*C36U37G38cWWcWWntSHncSH
33 IL_6DLR_0036DLR0.27020Minor groove platformAGuanidine-I riboswitchC21G22*C39U40G41cWWcWWtSHcSH
34 IL_5TBW_0395TBW0.27180Minor groove platform1 LSU rRNAA997A998*U1050U1051U1052cWWcWWtSHncSH
35 IL_4V88_4124V880.22450Minor groove platformA6 SSU rRNAU532U533*A518C519A520cWWcWWntSH
36 IL_5VSU_0035VSU0.37900Single stack bendI U6 snRNAC69U70*A75A76G77cWWcWW
37 IL_3RW6_0013RW60.52351Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAA7A8*U53A55U56cWWcWWncSH
38 IL_2GDI_0032GDI0.38240Minor groove platformXTPP riboswitchA35G36*C23C24U25cWWcWWncSH
39 IL_3K0J_0023K0J0.43210Minor groove platform relatedERNA (87-MER)A35G36*C18C19U20cWWcWWncSH
40 IL_5J7L_0645J7L0.56190Single bulged AAA SSU rRNAC1460G1461*U1440A1441G1442cWWcWW
41 IL_3IWN_0013IWN0.44290Minor groove platformAC-di-GMP riboswitchA2C3*G89A90U91cWWncWW
42 IL_4R4V_0074R4V0.48930Minor groove platformAVS ribozyme RNAU607||||7_556G608||||7_556*U777||||7_556U778||||7_556A779||||7_556cWWcWW
43 IL_4R4V_0014R4V0.48930Minor groove platformAVS ribozyme RNAU607G608*U777U778A779cWWcWW
44 IL_4V9F_0324V9F0.72110Single bulged A0 LSU rRNAC1023G1024*U942A943G944cWWcWW
45 IL_4V88_4454V880.56110Minor groove platformA6 SSU rRNAG1178G1179*C1459A1460C1461cWWcWW
46 IL_4Y4O_2094Y4O0.78220Minor groove platform2A LSU rRNAC898A899*U877A878G879cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GA*UCC7
GG*CAC5
GA*UACC5
AG*CAU4
CG*CUG3
CA*UAG2
AG*CCU2
CG*UAG2
UG*UUA2
GG*UCAGC1
GG*UCAUC1
CG*CCGG1
CC*GAAG1
AU*ACU1
AA*UACU1
CC*GAG1
UC*GAA1
CG*CAG1
AA*UUU1
UU*ACA1
CU*AAG1
AA*UAAU1
AC*GAU1
Non-Watson-Crick part of the motif
SequenceCounts
*A18
*C11
*U6
*AC6
*AA2
*CAG1
*CAU1
*CG1

Release history

Release3.483.493.503.513.523.53
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (40)
  • Single bulged A (2)
  • Single stack bend (2)
  • Minor groove platform related (1)
  • Minor groove platform, major groove intercalation (1)
    • Basepair signature
    cWW-tSH-cWW
    Heat map statistics
    Min 0.06 | Avg 0.52 | Max 0.99
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