#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6 7 81-82-52-73-43-63-75-7
1 IL_4GMA_0074GMA0.26070ZAdenosylcobalamin riboswitchC113A114C115*G128G129A130A131G132cWWcWWntSH
2 IL_4GXY_0094GXY0.00000Major groove minor groove platform with extra cWWAAdenosylcobalamin riboswitchC105A106C107*G122G123A124A125G126cWWntHScWWntSH
3 IL_4BPP_0714BPP0.59512A18S RRNAA1317A1320G1321*C1346U1347U1348C1349U1350cWWcWWcWWntSHncSWcSH
4 IL_2XXA_0092XXA0.81890G SSRP RNAG10U11G12*C89C90U91U92C93cWWcWWntSH
5 IL_4IOA_0884IOA0.75980Major groove minor groove platform with extra cWW (H)X LSU rRNAA2438U2439C2440*G2468G2469U2470U2471U2472cWWcwWcWWcSH
6 IL_2QBG_0932QBG0.84210B23S rRNAA2459U2460A2461*U2489G2490U2491U2492U2493cWWcwWcWWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GGAAG2
ACUAG*CUUCU1
GUG*CCUUC1
AUC*GGUUU1
AUA*UGUUU1
Non-Watson-Crick part of the motif
SequenceCounts
A*GAA2
U*GUU2
CUA*UUC1
U*CUU1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_25380.1Only in the child motif
IL_74856.1
Compare
IL_4GMA_007, IL_2QBG_093, IL_2XXA_009, IL_4IOA_088, IL_4BPP_071IL_4GXY_009IL_3ZP8_001, IL_1VW3_076, IL_4NVV_090
IL_32261.1
Compare
IL_4GXY_009IL_4GMA_007, IL_2QBG_093, IL_2XXA_009, IL_4IOA_088, IL_4BPP_071IL_1FJG_063, IL_3U5F_021, IL_4BPP_019
Annotations
  • (4)
  • Major groove minor groove platform with extra cWW (1)
  • Major groove minor groove platform with extra cWW (H) (1)
  • Basepair signature
    cWW-cWW-cSH-R-cWW
    Heat map statistics
    Min 0.26 | Avg 0.60 | Max 0.98
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3915 s