Motif IL_25380.1 Version IL_25380.1 of this group appears in releases 1.5 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 3-7 | 5-7 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4GMA_007 | 4GMA | 0.2607 | 0 | Z | Adenosylcobalamin riboswitch | C | 113 | A | 114 | C | 115 | * | G | 128 | G | 129 | A | 130 | A | 131 | G | 132 | cWW | cWW | ntSH | |||||
2 | IL_4GXY_009 | 4GXY | 0.0000 | 0 | Major groove minor groove platform with extra cWW | A | Adenosylcobalamin riboswitch | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH | |||
3 | IL_4BPP_071 | 4BPP | 0.5951 | 2 | A | 18S RRNA | A | 1317 | A | 1320 | G | 1321 | * | C | 1346 | U | 1347 | U | 1348 | C | 1349 | U | 1350 | cWW | cWW | cWW | ntSH | ncSW | cSH | ||
4 | IL_2XXA_009 | 2XXA | 0.8189 | 0 | G | SSRP RNA | G | 10 | U | 11 | G | 12 | * | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | cWW | cWW | ntSH | |||||
5 | IL_4IOA_088 | 4IOA | 0.7598 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | |||
6 | IL_2QBG_093 | 2QBG | 0.8421 | 0 | B | 23S rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | ncSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAC*GGAAG | 2 |
ACUAG*CUUCU | 1 |
GUG*CCUUC | 1 |
AUC*GGUUU | 1 |
AUA*UGUUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*GAA | 2 |
U*GUU | 2 |
CUA*UUC | 1 |
U*CUU | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_25380.1 | Only in the parent motif |
---|---|---|---|
IL_08559.1 Compare | IL_2QBG_093, IL_2XXA_009, IL_4IOA_088 | IL_4GMA_007, IL_4BPP_071, IL_4GXY_009 | IL_3ZP8_001 |
IL_54420.1 Compare | IL_4GMA_007, IL_4GXY_009 | IL_2QBG_093, IL_2XXA_009, IL_4IOA_088, IL_4BPP_071 | IL_2XZM_067, IL_1FJG_063, IL_2XZM_073, IL_3U5F_068 |
Children motifs
Child motif | Common motif instances | Only in IL_25380.1 | Only in the child motif |
---|---|---|---|
IL_74856.1 Compare | IL_4GMA_007, IL_2QBG_093, IL_2XXA_009, IL_4IOA_088, IL_4BPP_071 | IL_4GXY_009 | IL_3ZP8_001, IL_1VW3_076, IL_4NVV_090 |
IL_32261.1 Compare | IL_4GXY_009 | IL_4GMA_007, IL_2QBG_093, IL_2XXA_009, IL_4IOA_088, IL_4BPP_071 | IL_1FJG_063, IL_3U5F_021, IL_4BPP_019 |
- Annotations
-
- (4)
- Major groove minor groove platform with extra cWW (1)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.26 | Avg 0.60 | Max 0.98
Coloring options: