Motif IL_08757.2 Version IL_08757.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5WTI_001 | 5WTI | 0.9535 | 2 | Other IL | B | RNA (123-MER) | G | 0 | C | 1 | G | 2 | G | 5 | * | C | 25 | A | 26 | A | 27 | C | 28 | cWW | ncWW | cWW | |
| 2 | IL_5TBW_043 | 5TBW | 0.7686 | 2 | Other IL | 1 | LSU rRNA | G | 1013 | U | 1014 | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | A | 1036 | C | 1037 | cWW | ncWW | ntHW | cWW |
| 3 | IL_5UNE_005 | 5UNE | 0.6505 | 0 | tSH-tHW | A+B | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ncSW | ntHW | cWW |
| 4 | IL_4Y4O_188 | 4Y4O | 0.3509 | 1 | tSH-tHW (H) | 2A | LSU rRNA | C | 280 | G | 281 | A | 282 | U | 284 | * | A | 357 | U | 358 | A | 359 | G | 360 | cWW | tSH | tHW | cWW |
| 5 | IL_4Y4O_233 | 4Y4O | 0.1749 | 1 | tSH-tHW (H) | 2A | LSU rRNA | C | 1551 | G | 1552 | A | 1553 | G | 1555 | * | C | 1437 | U | 1438 | A | 1439 | G | 1440 | cWW | tSH | tHW | cWW |
| 6 | IL_6CK5_001 | 6CK5 | 0.1499 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 45 | G | 46 | A | 47 | G | 50 | * | C | 12 | U | 13 | A | 14 | G | 15 | cWW | tSH | tHW | cWW |
| 7 | IL_6DLR_001 | 6DLR | 0.1344 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 45 | A | 46 | A | 47 | G | 50 | * | C | 12 | U | 13 | A | 14 | G | 15 | cWW | tSH | tHW | cWW |
| 8 | IL_5T83_001 | 5T83 | 0.1587 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 42 | A | 43 | A | 44 | G | 47 | * | C | 12 | U | 13 | A | 14 | G | 15 | cWW | tSH | tHW | cWW |
| 9 | IL_5U3G_001 | 5U3G | 0.0000 | 2 | tSH-tHW | B | Guanidine-I riboswitch | C | 30 | G | 31 | A | 32 | G | 35 | * | C | 6 | U | 7 | A | 8 | G | 9 | cWW | tSH | tHW | cWW |
| 10 | IL_5J7L_297 | 5J7L | 0.1607 | 1 | tSH-tHW | DA | LSU rRNA | A | 1551 | A | 1552 | A | 1553 | G | 1555 | * | C | 1437 | U | 1438 | A | 1439 | U | 1440 | cWW | tSH | tHW | cWW |
| 11 | IL_7A0S_053 | 7A0S | 0.1960 | 1 | tSH-tHW | X | LSU rRNA | A | 1567 | A | 1568 | A | 1569 | G | 1571 | * | C | 1451 | U | 1452 | A | 1453 | U | 1454 | cWW | tSH | tHW | cWW |
| 12 | IL_3NDB_007 | 3NDB | 0.2521 | 3 | tSH-tHW | M | SRP RNA | C | 192 | G | 193 | A | 194 | C | 198 | * | G | 223 | U | 224 | A | 225 | G | 226 | cWW | tSH | tHW | cWW |
| 13 | IL_6DME_001 | 6DME | 0.4121 | 2 | tSH-tHW | A | ppGpp Riboswitch | C | 40 | A | 41 | A | 42 | G | 45 | * | C | 11 | U | 12 | A | 13 | G | 14 | cWW | tSH | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAGG*CAAC | 1 |
| GUUCCG*UGAC | 1 |
| GCAC*GCAC | 1 |
| CGAAU*AUAG | 1 |
| CGAAG*CUAG | 1 |
| CGAGCG*CUAG | 1 |
| CAAGUG*CUAG | 1 |
| CAAGAG*CUAG | 1 |
| CGAGAG*CUAG | 1 |
| AAAUG*CUAU | 1 |
| AAACG*CUAU | 1 |
| CGAACCC*GUAG | 1 |
| CAAGCG*CUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*UA | 2 |
| CGAG*AA | 1 |
| UUCC*GA | 1 |
| CA*CA | 1 |
| GAGC*UA | 1 |
| AAGU*UA | 1 |
| AAGA*UA | 1 |
| GAGA*UA | 1 |
| AAU*UA | 1 |
| AAC*UA | 1 |
| GAACC*UA | 1 |
| AAGC*UA | 1 |
- Annotations
-
- tSH-tHW (9)
- tSH-tHW (H) (2)
- Other IL (2)
- Basepair signature
- cWW-tSH-tHW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.46 | Max 1.01
Coloring options: