Motif IL_08757.3 Version IL_08757.3 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6DME_001 | 6DME | 0.4121 | 2 | tSH-tHW | A | ppGpp Riboswitch | C | 11 | U | 12 | A | 13 | G | 14 | * | C | 40 | A | 41 | A | 42 | G | 45 | cWW | ntWW | tHS | cWW |
| 2 | IL_3NDB_007 | 3NDB | 0.2521 | 3 | tSH-tHW | M | SRP RNA | G | 223 | U | 224 | A | 225 | G | 226 | * | C | 192 | G | 193 | A | 194 | C | 198 | cWW | tWH | tHS | cWW |
| 3 | IL_7A0S_053 | 7A0S | 0.1960 | 1 | tSH-tHW | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
| 4 | IL_5J7L_297 | 5J7L | 0.1607 | 1 | tSH-tHW | DA | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | U | 1440 | * | A | 1551 | A | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW |
| 5 | IL_6CK5_001 | 6CK5 | 0.1499 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 12 | U | 13 | A | 14 | G | 15 | * | C | 45 | G | 46 | A | 47 | G | 50 | cWW | tWH | tHS | cWW |
| 6 | IL_6DLR_001 | 6DLR | 0.1344 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 12 | U | 13 | A | 14 | G | 15 | * | C | 45 | A | 46 | A | 47 | G | 50 | cWW | tWH | tHS | cWW |
| 7 | IL_5T83_001 | 5T83 | 0.1587 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 12 | U | 13 | A | 14 | G | 15 | * | C | 42 | A | 43 | A | 44 | G | 47 | cWW | tWH | tHS | cWW |
| 8 | IL_5U3G_001 | 5U3G | 0.0000 | 2 | tSH-tHW | B | Guanidine-I riboswitch | C | 6 | U | 7 | A | 8 | G | 9 | * | C | 30 | G | 31 | A | 32 | G | 35 | cWW | tWH | tHS | cWW |
| 9 | IL_7RQB_057 | 7RQB | 0.1512 | 1 | tSH-tHW | 1A | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | G | 1440 | * | C | 1551 | G | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW |
| 10 | IL_7RQB_011 | 7RQB | 0.2890 | 1 | tSH-tHW | 1A | LSU rRNA | A | 357 | U | 358 | A | 359 | G | 360 | * | C | 280 | G | 281 | A | 282 | U | 284 | cWW | tWH | tHS | cWW |
| 11 | IL_5UNE_005 | 5UNE | 0.6505 | 0 | tSH-tHW | B+A | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ntWH | ncWS | cWW |
| 12 | IL_5TBW_043 | 5TBW | 0.7686 | 2 | Other IL | 1 | LSU rRNA | U | 1034 | G | 1035 | A | 1036 | C | 1037 | * | G | 1013 | U | 1014 | U | 1015 | G | 1018 | cWW | ntWH | ncWW | cWW |
| 13 | IL_5WTI_001 | 5WTI | 0.9535 | 2 | Other IL | B | RNA (123-MER) | C | 25 | A | 26 | A | 27 | C | 28 | * | G | 0 | C | 1 | G | 2 | G | 5 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CAAGCG | 1 |
| GUAG*CGAACCC | 1 |
| CUAU*AAACG | 1 |
| CUAU*AAAUG | 1 |
| CUAG*CGAGCG | 1 |
| CUAG*CAAGUG | 1 |
| CUAG*CAAGAG | 1 |
| CUAG*CGAGAG | 1 |
| CUAG*CGAAG | 1 |
| AUAG*CGAAU | 1 |
| GCAC*GCAC | 1 |
| UGAC*GUUCCG | 1 |
| CAAC*GCGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA | 2 |
| UA*AAGC | 1 |
| UA*GAACC | 1 |
| UA*AAC | 1 |
| UA*AAU | 1 |
| UA*GAGC | 1 |
| UA*AAGU | 1 |
| UA*AAGA | 1 |
| UA*GAGA | 1 |
| CA*CA | 1 |
| GA*UUCC | 1 |
| AA*CGAG | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW (11)
- Other IL (2)
- Basepair signature
- cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.45 | Max 1.01
Coloring options: