Motif IL_08981.1 Version IL_08981.1 of this group appears in releases 0.1 to 0.1

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)		1		2		3		4	break		5		6		7		8	1-8	2-7	4-5
1	IL_3F1H_044	3F1H	0.0000	1	A	C	1202	G	1203	A	1204	G	1206	*	U	1240	A	1241	A	1242	G	1243	cWW	tSH	cWW
2	IL_3BNQ_011	3BNQ	0.8357	1	C+D	G	15	C	16	A	17	G	19	*	C	5	A	6	C	7	C	8	cWW		cWW
3	IL_3BNQ_005	3BNQ	0.8477	1	A+B	G	15	C	16	A	17	G	19	*	C	7	A	8	C	9	C	10	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCAAG*CACC	2
CGAUG*UAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAA*AC	2
GAU*AA	1

Release history

Release	0.1
Date	2011-12-08
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motif	Common motif instances	Only in IL_08981.1	Only in the child motif
IL_01643.1 Compare	IL_3BNQ_011, IL_3F1H_044, IL_3BNQ_005		IL_2ZJR_057, IL_3BNP_003, IL_3BNP_002, IL_1SAQ_002, IL_2ZJR_082, IL_3D0U_002, IL_1FJG_059, IL_1SA9_002, IL_1SA9_001, IL_1S72_098

Annotations: (3)
Basepair signature
Heat map statistics: Min 0.09 | Avg 0.39 | Max 0.85

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