Motif IL_01643.1 Version IL_01643.1 of this group appears in releases 0.2 to 0.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_3BNQ_011	3BNQ	0.2470	1		C+D	A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain	G	15	C	16	A	17	G	19	*	C	5	A	6	C	7	C	8	cWW			cWW
2	IL_3F1H_044	3F1H	0.1555	1		A	23S RRNA	U	1240	A	1241	A	1242	G	1243	*	C	1202	G	1203	A	1204	G	1206	cWW		tHS	cWW
3	IL_1SAQ_002	1SAQ	0.0000	0	Double sheared	A+B	RNA (8-mer)	C	103	G	104	A	105	G	106	*	C	111	G	112	A	113	G	114	cWW	tSH	tHS	cWW
4	IL_3BNP_003	3BNP	0.1049	1		B+A	A site of human mitochondrial ribosome, B chain	C	5	A	6	C	7	C	8	*	G	14	C	15	A	16	G	18	cWW			cWW
5	IL_3BNP_002	3BNP	0.1687	1		B+A	A site of human mitochondrial ribosome, B chain	G	13	C	14	A	15	G	17	*	C	6	A	7	C	8	C	9	cWW			cWW
6	IL_3BNQ_005	3BNQ	0.1695	1		A+B	A site of human mitochondrial ribosome, A chain	G	15	C	16	A	17	G	19	*	C	7	A	8	C	9	C	10	cWW			cWW
7	IL_1S72_098	1S72	0.2804	0		0	LSU rRNA	C	2881	G	2882	A	2883	G	2884	*	C	2873	G	2874	A	2875	G	2876	cWW	tSH	tHS	cWW
8	IL_2ZJR_057	2ZJR	0.3625	0		X	LSU rRNA	U	1530	C	1531	A	1532	G	1533	*	C	1491	A	1492	A	1493	G	1494	cWW	tSH	ntHS	cWW
9	IL_2ZJR_082	2ZJR	1.2436	0	Double sheared (H)	X	LSU rRNA	C	2329	G	2330	A	2331	G	2332	*	C	2343	G	2344	A	2345	G	2346	cWW	ntSH	ntHS	cWW
10	IL_1FJG_059	1FJG	1.3874	0	Double sheared (H)	A	SSU rRNA	G	1416	G	1417	A	1418	G	1419	*	U	1481	G	1482	A	1483	C	1484	cWW	tSH	tHS	cWW
11	IL_3D0U_002	3D0U	1.5332	0	Double sheared	A	Lysine Riboswitch RNA	C	16	G	17	A	18	G	19	*	C	67	G	68	A	69	G	70	cWW	tSH	tHS	cWW
12	IL_1SA9_002	1SA9	1.5747	0	Double sheared	C+D	RNA (8-mer)	C	203	G	204	A	205	G	206	*	C	211	G	212	A	213	G	214	cWW	tSH	ntHS	cWW
13	IL_1SA9_001	1SA9	1.5543	0		A+B	RNA (8-mer)	C	103	G	104	A	105	G	106	*	C	111	G	112	A	113	G	114	cWW	tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAG*CGAG	6
GCAAG*CACC	3
UAAG*CGAUG	1
CACC*GCAAG	1
UCAG*CAAG	1
GGAG*UGAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GA	7
CAA*AC	3
AA*GAU	1
AC*CAA	1
CA*AA	1

Release history

Release	0.2
Date	2011-12-08
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_01643.1	Only in the parent motif
IL_55389.1 Compare	IL_2ZJR_057, IL_1SAQ_002, IL_1FJG_059, IL_3D0U_002, IL_2ZJR_082, IL_1SA9_002, IL_1SA9_001, IL_1S72_098	IL_3BNP_003, IL_3BNP_002, IL_3F1H_044, IL_3BNQ_011, IL_3BNQ_005	IL_3F1H_086, IL_2DR2_001, IL_3DIR_002, IL_2O3Y_003
IL_08981.1 Compare	IL_3BNQ_011, IL_3F1H_044, IL_3BNQ_005	IL_2ZJR_057, IL_3BNP_003, IL_3BNP_002, IL_1SAQ_002, IL_2ZJR_082, IL_3D0U_002, IL_1FJG_059, IL_1SA9_002, IL_1SA9_001, IL_1S72_098
IL_22458.1 Compare	IL_3BNP_003, IL_3BNP_002	IL_2ZJR_057, IL_1SAQ_002, IL_2ZJR_082, IL_3D0U_002, IL_1FJG_059, IL_1SA9_002, IL_1SA9_001, IL_1S72_098, IL_3F1H_044, IL_3BNQ_011, IL_3BNQ_005	IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003

Children motifs

Child motif	Common motif instances	Only in IL_01643.1	Only in the child motif
IL_01643.2 Compare	IL_3BNP_003, IL_3BNP_002, IL_2ZJR_082, IL_3D0U_002, IL_1FJG_059, IL_1SA9_002, IL_1SA9_001, IL_3BNQ_011, IL_3BNQ_005	IL_2ZJR_057, IL_1S72_098, IL_1SAQ_002, IL_3F1H_044
IL_63091.1 Compare	IL_2ZJR_057, IL_1S72_098, IL_1SAQ_002	IL_3BNP_003, IL_3BNP_002, IL_2ZJR_082, IL_3D0U_002, IL_1FJG_059, IL_1SA9_002, IL_1SA9_001, IL_3F1H_044, IL_3BNQ_011, IL_3BNQ_005	IL_2QBZ_003, IL_3F1H_086, IL_3DIR_002
IL_57785.2 Compare	IL_3F1H_044	IL_2ZJR_057, IL_3BNP_003, IL_3BNP_002, IL_1SAQ_002, IL_1FJG_059, IL_3D0U_002, IL_2ZJR_082, IL_1SA9_002, IL_1SA9_001, IL_1S72_098, IL_3BNQ_011, IL_3BNQ_005	IL_2FQN_003, IL_2OE5_002

Annotations: (8)
Double sheared (3)
Double sheared (H) (2)
Basepair signature
Heat map statistics: Min 0.09 | Avg 0.88 | Max 1.60

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Coloring options: Nucleotide numbers

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