#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 61-62-32-42-53-64-5
1 IL_1U9S_0041U9S0.45720Major groove minor groove platform; mini C-loopARIBONUCLEASE PC164A165A166G167*C133G134cWWcSHncWBcWW
2 IL_8C3A_4308C3A0.21740Major groove minor groove platform; mini C-loopCM SSU rRNAG786A787A788U789*A731C732cWWcWW
3 IL_4V88_4234V880.15170Major groove minor groove platform; mini C-loopA6 SSU rRNAG802A803A804U805*A746C747cWWcSHcWW
4 IL_1S03_0031S030.00000Major groove minor groove platform; mini C-loopA47-MERA12A13A14C15*G37U38cWWcSHncSHntWHncWScWW
5 IL_1S03_0071S030.03070Major groove minor groove platform; mini C-loopB47-MERA12A13A14C15*G37U38cWWcSHncSHntWHncWScWW
6 IL_5J7L_0295J7L0.10260Major groove minor groove platform; mini C-loopAA SSU rRNAA640U641A642C643*G597U598cWWcSHncSHncWScWW
7 IL_4LFB_0254LFB0.12860Major groove minor groove platform; mini C-loopA SSU rRNAA640U641A642C643*G597U598cWWncSHncSHncWScWW
8 IL_4PDB_0024PDB0.11160Major groove minor groove platform; mini C-loopISELEX RNA aptamerA24U25A26U27*A14U15cWWncSHncWScWW
9 IL_1I6U_0021I6U0.13370Major groove minor groove platform; mini C-loopC16S RRNA FRAGMENTA24U25A26C27*G12U13cWWcSHncSHncWScWW
10 IL_6CZR_1376CZR0.20930Major groove minor groove platform; mini C-loop1a SSU rRNAA624U625A626C627*G581U582ncWWncSHcWW
11 IL_4WF9_1264WF90.25240Y 5S rRNAG49A50A51G52*C28C29ncWWncSHncWBncWScWW
12 IL_5J7L_3575J7L0.27230Major groove minor groove platform; mini C-loopDB 5S rRNAG51A52A53G54*C30C31cWWncSHncSHncWBcWScWW
13 IL_4V9F_1034V9F0.23940Major groove minor groove platform; mini C-loop9 5S rRNAG50A51A52G53*C29C30cWWcSHncWBcWScWW
14 IL_8VTW_1128VTW0.245901B 5S rRNAG51A52A53G54*C30C31cWWcSHncWBcWScWW
15 IL_5J7L_3165J7L0.25440Major groove minor groove platform; mini C-loopDA LSU rRNAG1846A1847A1848G1849*C1893C1894cWWncSHncWBncWScWW
16 IL_4WF9_0724WF90.37860X LSU rRNAG1873A1874A1875G1876*C1920C1921ncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAG*CC6
AUAC*GU4
GAAU*AC2
AAAC*GU2
CAAG*CG1
AUAU*AU1
Non-Watson-Crick part of the motif
SequenceCounts
AA*11
UA*5

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove minor groove platform; mini C-loop (13)
  • (3)
  • Basepair signature
    cWW-cWS-cSH-cWW
    Heat map statistics
    Min 0.03 | Avg 0.26 | Max 0.57
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