Motif IL_09061.10 Version IL_09061.10 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-3 | 2-4 | 2-5 | 3-6 | 4-5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1U9S_004 | 1U9S | 0.4572 | 0 | Major groove minor groove platform; mini C-loop | A | RIBONUCLEASE P | C | 164 | A | 165 | A | 166 | G | 167 | * | C | 133 | G | 134 | cWW | cSH | ncWB | cWW | ||
2 | IL_8C3A_430 | 8C3A | 0.2174 | 0 | Major groove minor groove platform; mini C-loop | CM | SSU rRNA | G | 786 | A | 787 | A | 788 | U | 789 | * | A | 731 | C | 732 | cWW | cWW | ||||
3 | IL_4V88_423 | 4V88 | 0.1517 | 0 | Major groove minor groove platform; mini C-loop | A6 | SSU rRNA | G | 802 | A | 803 | A | 804 | U | 805 | * | A | 746 | C | 747 | cWW | cSH | cWW | |||
4 | IL_1S03_003 | 1S03 | 0.0000 | 0 | Major groove minor groove platform; mini C-loop | A | 47-MER | A | 12 | A | 13 | A | 14 | C | 15 | * | G | 37 | U | 38 | cWW | cSH | ncSH | ntWH | ncWS | cWW |
5 | IL_1S03_007 | 1S03 | 0.0307 | 0 | Major groove minor groove platform; mini C-loop | B | 47-MER | A | 12 | A | 13 | A | 14 | C | 15 | * | G | 37 | U | 38 | cWW | cSH | ncSH | ntWH | ncWS | cWW |
6 | IL_5J7L_029 | 5J7L | 0.1026 | 0 | Major groove minor groove platform; mini C-loop | AA | SSU rRNA | A | 640 | U | 641 | A | 642 | C | 643 | * | G | 597 | U | 598 | cWW | cSH | ncSH | ncWS | cWW | |
7 | IL_4LFB_025 | 4LFB | 0.1286 | 0 | Major groove minor groove platform; mini C-loop | A | SSU rRNA | A | 640 | U | 641 | A | 642 | C | 643 | * | G | 597 | U | 598 | cWW | ncSH | ncSH | ncWS | cWW | |
8 | IL_4PDB_002 | 4PDB | 0.1116 | 0 | Major groove minor groove platform; mini C-loop | I | SELEX RNA aptamer | A | 24 | U | 25 | A | 26 | U | 27 | * | A | 14 | U | 15 | cWW | ncSH | ncWS | cWW | ||
9 | IL_1I6U_002 | 1I6U | 0.1337 | 0 | Major groove minor groove platform; mini C-loop | C | 16S RRNA FRAGMENT | A | 24 | U | 25 | A | 26 | C | 27 | * | G | 12 | U | 13 | cWW | cSH | ncSH | ncWS | cWW | |
10 | IL_6CZR_137 | 6CZR | 0.2093 | 0 | Major groove minor groove platform; mini C-loop | 1a | SSU rRNA | A | 624 | U | 625 | A | 626 | C | 627 | * | G | 581 | U | 582 | ncWW | ncSH | cWW | |||
11 | IL_4WF9_126 | 4WF9 | 0.2524 | 0 | Y | 5S rRNA | G | 49 | A | 50 | A | 51 | G | 52 | * | C | 28 | C | 29 | ncWW | ncSH | ncWB | ncWS | cWW | ||
12 | IL_5J7L_357 | 5J7L | 0.2723 | 0 | Major groove minor groove platform; mini C-loop | DB | 5S rRNA | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 30 | C | 31 | cWW | ncSH | ncSH | ncWB | cWS | cWW |
13 | IL_4V9F_103 | 4V9F | 0.2394 | 0 | Major groove minor groove platform; mini C-loop | 9 | 5S rRNA | G | 50 | A | 51 | A | 52 | G | 53 | * | C | 29 | C | 30 | cWW | cSH | ncWB | cWS | cWW | |
14 | IL_8VTW_112 | 8VTW | 0.2459 | 0 | 1B | 5S rRNA | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 30 | C | 31 | cWW | cSH | ncWB | cWS | cWW | ||
15 | IL_5J7L_316 | 5J7L | 0.2544 | 0 | Major groove minor groove platform; mini C-loop | DA | LSU rRNA | G | 1846 | A | 1847 | A | 1848 | G | 1849 | * | C | 1893 | C | 1894 | cWW | ncSH | ncWB | ncWS | cWW | |
16 | IL_4WF9_072 | 4WF9 | 0.3786 | 0 | X | LSU rRNA | G | 1873 | A | 1874 | A | 1875 | G | 1876 | * | C | 1920 | C | 1921 | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAG*CC | 6 |
AUAC*GU | 4 |
GAAU*AC | 2 |
AAAC*GU | 2 |
CAAG*CG | 1 |
AUAU*AU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA* | 11 |
UA* | 5 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform; mini C-loop (13)
- (3)
- Basepair signature
- cWW-cWS-cSH-cWW
- Heat map statistics
- Min 0.03 | Avg 0.26 | Max 0.57
Coloring options: