Motif IL_09061.5 Version IL_09061.5 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	3-6	4-5
1	IL_1U9S_004	1U9S	0.4572	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	164	A	165	A	166	G	167	*	C	133	G	134	cWW		cSH	ncWB		cWW
2	IL_4V88_423	4V88	0.1517	0	Major groove minor groove platform; mini C-loop	A6	SSU rRNA	G	802	A	803	A	804	U	805	*	A	746	C	747	cWW	cSH				cWW
3	IL_1S03_003	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	A	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
4	IL_1S03_007	1S03	0.0307	0	Major groove minor groove platform; mini C-loop	B	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
5	IL_5J7L_029	5J7L	0.1026	0	Major groove minor groove platform; mini C-loop	AA	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	cSH	ncSH		ncWS	cWW
6	IL_4LFB_025	4LFB	0.1286	0	Major groove minor groove platform; mini C-loop	A	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	ncSH	ncSH		ncWS	cWW
7	IL_4PDB_002	4PDB	0.1116	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	24	U	25	A	26	U	27	*	A	14	U	15	cWW	ncSH			ncWS	cWW
8	IL_1I6U_002	1I6U	0.1337	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	A	24	U	25	A	26	C	27	*	G	12	U	13	cWW	cSH	ncSH		ncWS	cWW
9	IL_6CZR_137	6CZR	0.2093	0	Major groove minor groove platform; mini C-loop	1a	SSU rRNA	A	624	U	625	A	626	C	627	*	G	581	U	582	ncWW		ncSH			cWW
10	IL_5J7L_357	5J7L	0.2723	0	Major groove minor groove platform; mini C-loop	DB	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	ncSH	ncSH	ncWB	cWS	cWW
11	IL_4V9F_103	4V9F	0.2394	0	Major groove minor groove platform; mini C-loop	9	5S rRNA	G	50	A	51	A	52	G	53	*	C	29	C	30	cWW	cSH		ncWB	cWS	cWW
12	IL_7RQB_113	7RQB	0.2295	0	Major groove minor groove platform; mini C-loop	1B	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	cSH		ncWB	cWS	cWW
13	IL_5J7L_316	5J7L	0.2544	0	Major groove minor groove platform; mini C-loop	DA	LSU rRNA	G	1846	A	1847	A	1848	G	1849	*	C	1893	C	1894	cWW	ncSH		ncWB	ncWS	cWW
14	IL_6XJQ_003	6XJQ	0.6927	1		A	Self-alkylating ribozyme (58-MER)	U	42	A	43	G	45	C	46	*	G	16	G	17	cWW					cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUAC*GU	4
GAAG*CC	4
AAAC*GU	2
CAAG*CG	1
GAAU*AC	1
AUAU*AU	1
UAGGC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	8
UA*	5
AGG*	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove minor groove platform; mini C-loop (13)
(1)
Basepair signature: cWW-cSH-cWS-cWW
Heat map statistics: Min 0.03 | Avg 0.30 | Max 0.81

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Coloring options: Nucleotide numbers

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