Motif IL_09587.1 Version IL_09587.1 of this group appears in releases 1.1 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-3 | 1-11 | 2-10 | 3-11 | 4-11 | 6-7 | 7-8 | 7-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_107 | 4IOA | 0.0000 | 1 | Y | 5S rRNA | C | 35 | A | 36 | C | 37 | C | 38 | C | 39 | C | 40 | * | G | 46 | A | 48 | C | 49 | U | 50 | G | 51 | cWW | ncWW | ncWS | cWW | ntSW | ||||
| 2 | IL_2AW7_053 | 2AW7 | 0.8908 | 0 | A | 16S ribosomal RNA | G | 1144 | A | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | * | G | 1124 | U | 1125 | U | 1126 | G | 1127 | C | 1128 | ncSH | cWW | cWW | ncWS | ncWS | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACCCC*GAACUG | 1 |
| GAACUC*GUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACCC*AACU | 1 |
| AACU*UUG | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09587.1 | Only in the parent motif |
|---|---|---|---|
| IL_88403.1 Compare | IL_2AW7_053 | IL_4IOA_107 |
Children motifs
| Child motif | Common motif instances | Only in IL_09587.1 | Only in the child motif |
|---|---|---|---|
| IL_33217.1 Compare | IL_2AW7_053 | IL_4IOA_107 | |
| IL_43363.1 Compare | IL_4IOA_107 | IL_2AW7_053 | IL_4CUX_071 |
- Annotations
- Basepair signature
- cWW-cWW-L-R-R-L-L-cWW
- Heat map statistics
- Min 0.89 | Avg 0.45 | Max 0.89
Coloring options: