#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-42-103-114-115-106-77-87-9
1 IL_4IOA_1074IOA0.00001Y 5S rRNAC35A36C37C38C39C40*G46A48C49U50G51cWWncSHncWWncWScWWntSW
2 IL_2AW7_0532AW70.89080A16S ribosomal RNAG1144A1145A1146C1147U1148C1149*G1124U1125U1126G1127C1128cWWcWWntHSncWStHScWWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
CACCCC*GAACUG1
GAACUC*GUUGC1
Non-Watson-Crick part of the motif
SequenceCounts
ACCC*AACU1
AACU*UUG1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.131.141.15
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-20
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_09587.1Only in the parent motif
IL_88403.1
Compare
IL_2AW7_053IL_4IOA_107

Children motifs

Child motifCommon motif instancesOnly in IL_09587.1Only in the child motif
IL_33217.1
Compare
IL_2AW7_053IL_4IOA_107
IL_43363.1
Compare
IL_4IOA_107IL_2AW7_053IL_4CUX_071
Annotations
  • (2)
  • Basepair signature
    cWW-cWW-L-R-R-L-L-cWW
    Heat map statistics
    Min 0.89 | Avg 0.45 | Max 0.89
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