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Motif IL_10167.4 Version IL_10167.4 of this group appears in releases 3.95 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_8CRE_4328CRE0.41061Isolated cWH basepair (H)CM SSU rRNAG942U943U945*G853A854C855cWWncWWa
2 IL_406D_006406D0.38750Isolated cWH basepairE+ARNA (17-mer)U25||DG26||DG27||D*U8||DG9||DG10||DncWWncHWcWW
3 IL_406D_002406D0.20640Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
4 IL_406D_005406D0.18900Isolated cWH basepairA+ERNA (17-mer)U8||CG9||CG10||C*U25||CG26||CG27||CcWWncHWcWW
5 IL_4E5C_0014E5C0.10530Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
6 IL_4KQ0_0034KQ00.11440Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
7 IL_3R1D_0143R1D0.08780Isolated cWH basepairA+BRNA (11-mer)C2||AGRB3||AG4||A*C8G9G10cWWcHWcWW
8 IL_3SJ2_0013SJ20.07400Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
9 IL_3SJ2_0033SJ20.06140Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
10 IL_3R1C_0183R1C0.06400Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
11 IL_3R1C_0123R1C0.06290Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
12 IL_3R1C_0113R1C0.05540Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
13 IL_3R1C_0173R1C0.06250Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
14 IL_3SJ2_0023SJ20.06150Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
15 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
16 IL_2R1S_0022R1S0.09220Isolated cWH basepairB+ARNA (13-mer)5BU19G20A21*5BU6G7A8cWWcHWcWW
17 IL_3W3S_0033W3S0.08080Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
18 IL_4KTG_0034KTG0.12640E+BRNA (19-mer)G209G210C211*G209G210C211cWWcHWcWW
19 IL_3R1D_0033R1D0.12600Isolated cWH basepairB+ARNA (11-mer)C2||AGRB3G4*C8G9G10cWWcHWcWW
20 IL_4J50_0034J500.16200Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
21 IL_4J50_0014J500.16200Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
22 IL_6IA2_0036IA20.16530Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
23 IL_4KTG_0014KTG0.15340B+ERNA (19-mer)G203G204C205*G215G216C217cWWcHWcWW
24 IL_4KTG_0054KTG0.15590E+BRNA (19-mer)G203G204C205*G215G216C217cWWcHWcWW
25 IL_4KQ0_0014KQ00.13320Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
26 IL_4KQ0_0054KQ00.13220Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
27 IL_3R1D_0023R1D0.15710Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
28 IL_4WF9_0454WF90.18360Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
29 IL_5J7L_0115J7L0.15640Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
30 IL_2H1M_0022H1M0.20210Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
31 IL_2H1M_0032H1M0.16400Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
32 IL_3D0M_0013D0M0.15720Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
33 IL_6RA4_0026RA40.15910Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
34 IL_4KQ0_0024KQ00.15000Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
35 IL_4KQ0_0044KQ00.15100Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
36 IL_4KTG_0044KTG0.18730B+ERNA (19-mer)G212G213C214*G206G207C208cWWcHWcWW
37 IL_4KTG_0024KTG0.19300E+BRNA (19-mer)G212G213C214*G206G207C208cWWcHWcWW
38 IL_4WF9_1214WF90.21620Isolated cWH basepairY 5S rRNAC110A111G112*U3G4G5cWWncHWncWWa
39 IL_7QQX_0057QQX0.24700A+C tracrRNA + FANCF off-target5 target strandU12G13C14*DG7DG8DA9cWWcHWcWW
40 IL_8CRE_4118CRE0.22010Isolated cWH basepair (H)CM SSU rRNAG387G388A389*U404A405C406cWWcHWcWW
41 IL_8P9A_3948P9A0.22530Isolated cWH basepairsR SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
42 IL_3R1E_0013R1E0.19510Isolated cWH basepairA+BRNA (8-mer)C2GRB3G4*C5G6G7cWWcHWcWW
43 IL_5F5F_0015F5F0.22540Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
44 IL_5F5F_0035F5F0.21420Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
45 IL_8P9A_4428P9A0.24350Isolated cWH basepairsR SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
46 IL_8P9A_4648P9A0.57240Isolated tWW contactsR SSU rRNAC1711A1712G1713*U1688A1689G1690ncWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG15
GGC*GGC5
UGG*UGG3
UGA*UGA3
UGC*GGA3
C(GRB)G*CGG2
CAG*CAG2
CGC*GGG2
AGU*AAU2
GGA*UAC2
GUUU*GAC1
(5BU)GA*(5BU)GA1
GGU*AGC1
CAG*UGG1
CG*CGG1
UGG*CGA1
CAG*UAG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G34
G*A4
(GRB)*G3
A*A3
UU*A1
A*G1

Release history

Release3.95
Date2025-03-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (37)
  • (6)
  • Isolated cWH basepair (H) (2)
  • Isolated tWW contact (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.22 | Max 0.77
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