Motif IL_10326.1 Version IL_10326.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 4-9 | 4-10 | 5-6 | 7-8 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_041 | 1S72 | 0.0000 | 2 | Kink-turn related (H) | 0 | LSU rRNA | U | 1115 | U | 1116 | A | 1117 | A | 1118 | G | 1119 | U | 1120 | G | 1121 | * | C | 1243 | U | 1244 | A | 1246 | A | 1248 | cWW | ntHW | ntWW | cSH | cWW |
2 | IL_2ZJR_035 | 2ZJR | 0.1224 | 2 | X | LSU rRNA | C | 1029 | U | 1030 | C | 1031 | A | 1032 | G | 1033 | U | 1034 | G | 1035 | * | C | 1150 | U | 1151 | A | 1153 | G | 1155 | cWW | ntHW | cSH | cWW | ||
3 | IL_3F1H_038 | 3F1H | 0.2377 | 2 | A | 23S RRNA | C | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 114|||B | G | 1144 | cWW | ntHW | cSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUAAGUG*CUCAAA | 1 |
CUCAGUG*CUCAAG | 1 |
CUAAGUG*CUUAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAAGU*UCAA | 1 |
UCAGU*UCAA | 1 |
UAAGU*UUAA | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_10326.1 | Only in the child motif |
---|---|---|---|
IL_10326.2 Compare | IL_2ZJR_035, IL_1S72_041 | IL_3F1H_038 | IL_3PYO_038 |
- Annotations
-
- (2)
- Kink-turn related (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.12 | Avg 0.13 | Max 0.24
Coloring options: