Motif IL_11015.2 Version IL_11015.2 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6		7	1-6	1-7	2-5	2-6	3-4	6-7
1	IL_2QBG_087	2QBG	0.5580	1		B	23S rRNA	A	2297	A	2298	U	2299	*	A	2317	G	2318	G	2319	U	2321	tHS	cWW	tHS		cWW
2	IL_4B5R_003	4B5R	0.2495	0	Major groove platform with extra pair (H)	A	SAM-I riboswitch	G	56	U	57	G	58	*	C	44	A	45	A	46	C	47		cWW	tHS		cWW	cSH
3	IL_3V7E_007	3V7E	0.1432	0	Major groove platform with extra pair (H)	D	SAM-I riboswitch	G	288	U	289	G	290	*	C	244	A	245	A	246	C	247		cWW	tHS		cWW	cSH
4	IL_4L81_001	4L81	0.0000	0		A	SAM-I/IV variant riboswitch aptamer domain	G	46	U	47	G	48	*	C	24	A	25	A	26	C	27		cWW	tHS		cWW	cSH
5	IL_3GX5_003	3GX5	0.0777	0		A	RNA (94-MER)	G	56	U	57	G	58	*	C	44	A	45	A	46	C	47		cWW	tHS		cWW	cSH
6	IL_4AOB_003	4AOB	0.1246	0	Major groove platform with extra pair	A	SAM-I riboswitch	G	56	U	57	G	58	*	C	44	A	45	A	46	C	47		cWW	tHS		cWW	ncSH
7	IL_4KQY_003	4KQY	0.1628	0	Major groove platform with extra pair	A	SAM-I riboswitch	G	77	U	78	G	79	*	C	45	A	46	A	47	C	48		cWW	ntHS		cWW	cSH
8	IL_3U5H_071	3U5H	0.4769	0		5	25S rRNA	U	1824	G	1825	C	1826	*	G	1618	A	1619	U	1620	A	1621		cWW		cWS	cWW
9	IL_1J2B_003	1J2B	0.3751	0		D	tRNA(Val)	C	926	G	927	C	928	*	G	944	A	945	G	946	G	947		cWW			ncWW
10	IL_3U5H_012	3U5H	0.4857	1		5	25S rRNA	U	177	U	178	C	179	*	G	237	A	238	G	239	G	241		cWW	ncWW		ncWW	cSH
11	IL_4CUV_095	4CUV	0.6720	1		1	25S RRNA	C	2235	G	2236	C	2237	*	G	2206	A	2207	A	2208	G	2210		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUG*CAAC	6
AAU*AGGUU	1
UGC*GAUA	1
CGC*GAGG	1
UUC*GAGUG	1
GAAUG*CGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*AA	6
A*GGU	1
G*AU	1
G*AG	1
U*AGU	1
AAU*G	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_11015.2	Only in the parent motif
IL_11015.1 Compare	IL_3V7E_007, IL_2QBG_087, IL_4CUV_095, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_4L81_001, IL_3U5H_012	IL_3U5H_071, IL_1J2B_003
IL_77277.1 Compare	IL_3U5H_071, IL_1J2B_003	IL_3V7E_007, IL_2QBG_087, IL_4CUV_095, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_4L81_001, IL_3U5H_012	IL_1X8W_009, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4NVV_089, IL_3Q1Q_006, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4A1B_093

Children motifs

Child motif	Common motif instances	Only in IL_11015.2	Only in the child motif
IL_11015.3 Compare	IL_3V7E_007, IL_2QBG_087, IL_4CUV_095, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_4L81_001, IL_3U5H_012	IL_3U5H_071, IL_1J2B_003	IL_4W23_016
IL_34098.2 Compare	IL_3U5H_071, IL_1J2B_003	IL_3V7E_007, IL_2QBG_087, IL_4CUV_095, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_4L81_001, IL_3U5H_012	IL_4W21_135, IL_1VX6_107, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4W21_146, IL_4QCN_090, IL_1X8W_009, IL_4W21_128, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4W23_025, IL_4A1B_093, IL_1VX6_009

Annotations: (7)
Major groove platform with extra pair (H) (2)
Major groove platform with extra pair (2)
Basepair signature: cWW-cSH-tHS-cWW
Heat map statistics: Min 0.08 | Avg 0.42 | Max 0.97

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Coloring options: Nucleotide numbers

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