Motif IL_34098.2 Version IL_34098.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	2-6	3-4	3-5	3-6	4-5	4-6
1	IL_1X8W_009	1X8W	0.4832	0	A	Group I catalytic intron	G	331	U	403	U	404	G	405	*	C	316	U	317	C	318	cWW					cWW
2	IL_4W21_128	4W21	0.3994	0	5	LSU rRNA	G	4095	C	4096	G	4097	A	4098	*	U	4111	C	4112	U	4113	ncWW
3	IL_1S72_053	1S72	0.4339	0	0	LSU rRNA	G	1475	A	1476	C	1477	U	1478	*	A	1465	C	1466	C	1467	cWW				cBW	cWW
4	IL_1VW3_029	1VW3	0.3344	0	A	LSU rRNA	U	818	U	819	U	820	U	821	*	G	805	G	806	A	807	cWW				ncWW	cWW
5	IL_1VX6_107	1VX6	0.3937	1	A	LSU rRNA	U	3109	A	3110	U	3112	U	3113	*	A	3145	U	3146	A	3147	cWW					cWW
6	IL_1VW3_056	1VW3	0.3566	0	A	LSU rRNA	A	1754	A	1755	U	1756	A	1757	*	U	1793	U	1794	U	1795	cWW					cWW
7	IL_4W21_135	4W21	0.0000	1	5	LSU rRNA	G	4347	A	4348	C	4350	U	4351	*	A	4363	G	4364	C	4365	cWW	ncWW				ncWW
8	IL_4W21_146	4W21	0.3178	0	5	LSU rRNA	A	4723	A	4724	C	4725	G	4726	*	U	4577	G	4578	U	4579	cWW	ncWW				cWW
9	IL_1VX6_009	1VX6	0.5857	0	A	LSU rRNA	C	255	A	256	U	257	U	258	*	A	173	U	174	G	175	cWW					cWW	ncWw
10	IL_3U5H_071	3U5H	0.3636	0	5	LSU rRNA	G	1618	A	1619	U	1620	A	1621	*	U	1824	G	1825	C	1826	cWW				cSW	cWW
11	IL_4CUV_071	4CUV	0.3498	0	1	LSU rRNA	G	1618	A	1619	U	1620	A	1621	*	U	1824	G	1825	C	1826	cWW				ncSW	cWW
12	IL_1J2B_003	1J2B	0.5906	0	D	tRNA	G	944	A	945	G	946	G	947	*	C	926	G	927	C	928	ncWW					cWW
13	IL_4A1B_089	4A1B	0.4716	1	1	LSU rRNA	G	2201	A	2202	A	2203	G	2205	*	C	2230	G	2231	C	2232	cWW	ncWW	ncSH			cWW
14	IL_4QCN_090	4QCN	0.4955	0	A	LSU rRNA	C	2468	U	2469	G	2470	A	2471	*	U	2505	G	2506	G	2507	cWW	ncWW		ntSH		cWW
15	IL_1VW3_032	1VW3	0.4940	0	A	LSU rRNA	A	919	A	920	G	921	A	922	*	U	1179	C	1180	U	1181	cWW	ncWWa				cWW
16	IL_4CUV_015	4CUV	0.5085	1	1	LSU rRNA	G	237	A	238	G	239	G	241	*	U	177	U	178	C	179	cWW	ncWW	ncSH			cWW
17	IL_4CUV_099	4CUV	0.5934	0	1	LSU rRNA	G	2391	C	2392	G	2393	G	2394	*	U	2986	A	2987	C	2988	cWW	ncWW	cSH			cWW
18	IL_3U5H_096	3U5H	0.5455	0	5	LSU rRNA	G	2391	C	2392	G	2393	G	2394	*	U	2986	A	2987	C	2988	cWW	cWW	cSH			cWW
19	IL_4A1B_093	4A1B	0.5754	0	1	LSU rRNA	G	2386	C	2387	G	2388	G	2389	*	U	2974	A	2975	C	2976	cWW	cWW	cSH			cWW
20	IL_4IOA_061	4IOA	0.3739	1	X	LSU rRNA	G	1503	G	1504	U	1505	A	1507	*	U	1515	A	1516	C	1517	cWW	cWW	ncWH			cWW
21	IL_4W23_025	4W23	0.6528	0	2	SSU rRNA	A	554	A	555	U	556	U	557	*	A	528	A	529	U	530	ncWW	ncwW	ncSH			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGG*UAC	3
GAUA*UGC	2
GUUG*CUC	1
GCGA*UCU	1
GACU*ACC	1
UUUU*GGA	1
UAUUU*AUA	1
AAUA*UUU	1
GACCU*AGC	1
AACG*UGU	1
CAUU*AUG	1
GAGG*CGC	1
GAAUG*CGC	1
CUGA*UGG	1
AAGA*UCU	1
UUC*GAGUG	1
GGUCA*UAC	1
AAUU*AAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CG*A	3
AU*U	2
AU*G	2
UU*U	1
CG*C	1
AC*C	1
UU*G	1
AUU*U	1
ACC*G	1
AC*G	1
AG*G	1
AAU*G	1
UG*G	1
AG*C	1
U*AGU	1
GUC*A	1
AU*A	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_34098.2	Only in the parent motif
IL_34098.1 Compare	IL_1X8W_009, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4A1B_093, IL_4CUV_071, IL_4QCN_090, IL_1VX6_107, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4CUV_015, IL_1VX6_009	IL_4W21_135, IL_4W21_146, IL_4W21_128, IL_1J2B_003, IL_4W23_025, IL_3U5H_071	IL_1VX6_098, IL_1VWW_025, IL_1VWW_008, IL_1VX2_011
IL_11015.2 Compare	IL_3U5H_071, IL_1J2B_003	IL_4W21_135, IL_1VX6_107, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4W21_146, IL_4QCN_090, IL_1X8W_009, IL_4W21_128, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4W23_025, IL_4A1B_093, IL_1VX6_009	IL_3V7E_007, IL_2QBG_087, IL_4CUV_095, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_4L81_001, IL_3U5H_012

Children motifs

This motif has no children motifs.

Annotations: (21)
Basepair signature: cWW-cWW-L-cWW
Heat map statistics: Min 0.09 | Avg 0.53 | Max 0.95

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