Motif IL_11419.1 Version IL_11419.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3F1H_022 | 3F1H | 0.1321 | 4 | A | 23S RRNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW | |
2 | IL_1S72_031 | 1S72 | 0.0000 | 4 | Multiple bulged bases (H) | 0 | LSU rRNA | G | 868 | G | 870 | * | C | 880 | C | 884 | cWW | cWW |
3 | IL_2ZJR_020 | 2ZJR | 0.0839 | 4 | Multiple bulged bases (H) | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGA*UAACC | 2 |
GGG*CCAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*AAC | 2 |
G*CAU | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_11419.1 | Only in the child motif |
---|---|---|---|
IL_14611.1 Compare | IL_2ZJR_020, IL_1S72_031 | IL_3F1H_022 | IL_2QBG_026, IL_3PYO_022, IL_3O58_047 |
- Annotations
-
- Multiple bulged bases (H) (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.08 | Avg 0.08 | Max 0.13
Coloring options: