Motif IL_12269.1 Version IL_12269.1 of this group appears in releases 0.7 to 0.9
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-6 | 4-5 | 4-17 | 5-17 | 10-16 | 11-15 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MZP_003 | 1MZP | 0.0000 | 0 | B | fragment of 23S rRNA | G | 20 | G | 21 | A | 22 | G | 23 | * | C | 32 | G | 33 | C | 34 | C | 35 | G | 36 | G | 37 | U | 38 | G | 39 | A | 40 | A | 41 | A | 42 | U | 43 | A | 44 | C | 45 | cWW | tSH | ntSs | cWW | ntsS | ntWH | tWH | ||
| 2 | IL_3U4M_003 | 3U4M | 0.1771 | 0 | B | LSU rRNA | G | 2124 | G | 2125 | A | 2126 | G | 2127 | * | C | 2161 | G | 2162 | C | 2163 | C | 2164 | G | 2165 | G | 2166 | U | 2167 | G | 2168 | A | 2169 | A | 2170 | A | 2171 | U | 2172 | A | 2173 | C | 2174 | cWW | tSH | ntSs | cWW | tsS | ncsS | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGCCGGUGAAAUAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GCCGGUGAAAUA | 2 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_12269.1 | Only in the parent motif |
|---|---|---|---|
| IL_48650.1 Compare | IL_1MZP_003 | IL_3U4M_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_12269.1 | Only in the child motif |
|---|---|---|---|
| IL_77076.1 Compare | IL_1MZP_003 | IL_3U4M_003 | IL_3UMY_003 |
- Annotations
- Basepair signature
- cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
- Heat map statistics
- Min 0.18 | Avg 0.09 | Max 0.18
Coloring options: