Motif IL_77076.1 Version IL_77076.1 of this group appears in releases 0.10 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-6 | 4-5 | 4-17 | 5-17 | 10-16 | 11-15 | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1MZP_003 | 1MZP | 0.0000 | 0 | B | fragment of 23S rRNA | G | 20 | G | 21 | A | 22 | G | 23 | * | C | 32 | G | 33 | C | 34 | C | 35 | G | 36 | G | 37 | U | 38 | G | 39 | A | 40 | A | 41 | A | 42 | U | 43 | A | 44 | C | 45 | cWW | tSH | ntSs | cWW | ntsS | ntWH | tWH | |
2 | IL_3UMY_003 | 3UMY | 0.1644 | 0 | B | LSU rRNA | G | 2124 | G | 2125 | A | 2126 | G | 2127 | * | C | 2161 | G | 2162 | C | 2163 | C | 2164 | G | 2165 | G | 2166 | U | 2167 | G | 2168 | A | 2169 | A | 2170 | A | 2171 | U | 2172 | A | 2173 | C | 2174 | cWW | tSH | tSs | cWW | tsS | ncsS | tWH | tWH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAG*CGCCGGUGAAAUAC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GA*GCCGGUGAAAUA | 2 |
Release history
Release | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_77076.1 | Only in the parent motif |
---|---|---|---|
IL_12269.1 Compare | IL_1MZP_003 | IL_3UMY_003 | IL_3U4M_003 |
Children motifs
Child motif | Common motif instances | Only in IL_77076.1 | Only in the child motif |
---|---|---|---|
IL_77076.2 Compare | IL_3UMY_003, IL_1MZP_003 | IL_4CUV_106 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
- Heat map statistics
- Min 0.16 | Avg 0.08 | Max 0.16
Coloring options: