#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 8 9 10 11 12 13 14 15 16 17 181-182-173-64-54-175-1710-1611-15
1 IL_1MZP_0031MZP0.00000Bfragment of 23S rRNAG20G21A22G23*C32G33C34C35G36G37U38G39A40A41A42U43A44C45cWWtSHntSscWWntsSntWHtWH
2 IL_3UMY_0033UMY0.16440B LSU rRNAG2124G2125A2126G2127*C2161G2162C2163C2164G2165G2166U2167G2168A2169A2170A2171U2172A2173C2174cWWtSHtSscWWtsSncsStWHtWH

3D structures

Complete motif including flanking bases
SequenceCounts
GGAG*CGCCGGUGAAAUAC2
Non-Watson-Crick part of the motif
SequenceCounts
GA*GCCGGUGAAAUA2

Release history

Release0.100.110.121.01.11.21.31.41.51.61.71.81.91.101.111.121.131.14
Date2013-02-172013-02-172013-02-172013-03-042013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_77076.1Only in the parent motif
IL_12269.1
Compare
IL_1MZP_003IL_3UMY_003IL_3U4M_003

Children motifs

Child motifCommon motif instancesOnly in IL_77076.1Only in the child motif
IL_77076.2
Compare
IL_3UMY_003, IL_1MZP_003IL_4CUV_106
Annotations
  • (2)
  • Basepair signature
    cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
    Heat map statistics
    Min 0.16 | Avg 0.08 | Max 0.16
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