Motif IL_12437.1 Version IL_12437.1 of this group appears in releases 0.1 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 2-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3MUR_005 | 3MUR | 0.3795 | 0 | R | C92U mutant c-di-GMP riboswitch | G | 76 | U | 77 | * | A | 61 | A | 62 | A | 63 | C | 64 | cWW | ncSW | |||
| 2 | IL_2ZJR_105 | 2ZJR | 0.0000 | 0 | Minor groove platform (H) | Y | 5S rRNA | C | 32 | C | 33 | * | G | 53 | U | 54 | C | 55 | G | 56 | cWW | cWW | ||
| 3 | IL_3F1H_110 | 3F1H | 0.3103 | 0 | B | 5S RRNA | C | 30 | C | 31 | * | G | 51 | A | 52 | A | 53 | G | 54 | cWW | ncWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAAC | 1 |
| CC*GUCG | 1 |
| CC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 2 |
| *UC | 1 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 |
|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
| Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_12437.1 | Only in the child motif |
|---|---|---|---|
| IL_33235.1 Compare | IL_2ZJR_105 | IL_3F1H_110, IL_3MUR_005 | IL_3PYO_065, IL_3PYO_100, IL_3PYO_054, IL_3O58_088, IL_2XZM_040, IL_2XZM_053, IL_3O58_102, IL_1FJG_051, IL_2AW7_035, IL_2AW7_025, IL_3O30_055 |
| IL_70242.1 Compare | IL_3MUR_005 | IL_3F1H_110, IL_2ZJR_105 | IL_1FJG_039, IL_2AW7_054, IL_2AW7_044, IL_2AW7_046, IL_2AW7_013, IL_3O30_059, IL_2AW7_007, IL_2QBG_003 |
- Annotations
-
- (2)
- Minor groove platform (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.31 | Avg 0.25 | Max 0.42
Coloring options: