#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 5 61-62-32-52-6
1 IL_3MUR_0053MUR0.37950RC92U mutant c-di-GMP riboswitchG76U77*A61A62A63C64cWWncSW
2 IL_2ZJR_1052ZJR0.00000Minor groove platform (H)Y 5S rRNAC32C33*G53U54C55G56cWWcWW
3 IL_3F1H_1103F1H0.31030B5S RRNAC30C31*G51A52A53G54cWWncWWncSW

3D structures

Complete motif including flanking bases
SequenceCounts
GU*AAAC1
CC*GUCG1
CC*GAAG1
Non-Watson-Crick part of the motif
SequenceCounts
*AA2
*UC1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_12437.1Only in the child motif
IL_33235.1
Compare
IL_2ZJR_105IL_3F1H_110, IL_3MUR_005IL_3PYO_065, IL_3PYO_100, IL_3PYO_054, IL_3O58_088, IL_2XZM_040, IL_2XZM_053, IL_3O58_102, IL_1FJG_051, IL_2AW7_035, IL_2AW7_025, IL_3O30_055
IL_70242.1
Compare
IL_3MUR_005IL_3F1H_110, IL_2ZJR_105IL_1FJG_039, IL_2AW7_054, IL_2AW7_044, IL_2AW7_046, IL_2AW7_013, IL_3O30_059, IL_2AW7_007, IL_2QBG_003
Annotations
  • (2)
  • Minor groove platform (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.31 | Avg 0.25 | Max 0.42
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.0958 s