#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_3U5H_1413U5H0.51470525S rRNAC3360G3361A3362U3363*A3342G3343A3344G3345cWWtSHntSscWW
2 IL_2AW7_0652AW70.42600A16S ribosomal RNAU1481G1482A1483C1484*G1416G1417A1418G1419cWWtSHtHScWW
3 IL_3DIR_0023DIR0.41880ARNA (174-MER)C70G71A72G73*C19G20A21G22cWWtSHtHScWW
4 IL_3U5F_0853U5F0.34000618S rRNAC1653G1654A1655U1656*A1744G1745A1746G1747cWWtSHtHScWW
5 IL_4A1B_1324A1B0.33780126S RRNAC3316G3317A3318U3319*A3300G3301A3302G3303cWWtSHtHScWW
6 IL_1S72_0981S720.337600 LSU rRNAC2873G2874A2875G2876*C2881G2882A2883G2884cWWtSHtHScWW
7 IL_4A1B_0074A1B0.23860126S RRNAC162A163A164C165*G254G255A256G257cWWtSHntHScWW
8 IL_4BPP_0854BPP0.23220A18S RRNAU1625A1626A1627C1628*G1697G1698A1699A1700cWWtSHtHScWW
9 IL_1FJG_0591FJG0.27560Double sheared (H)A SSU rRNAU1481G1482A1483C1484*G1416G1417A1418G1419cWWtSHtHScWW
10 IL_4A1B_0054A1B0.27930126S RRNAC138A139A140C141*G125A126A127G128cWWtSHcWW
11 IL_3D0U_0023D0U0.16070Double shearedALysine Riboswitch RNAC67G68A69G70*C16G17A18G19cWWtSHtHScWW
12 IL_1SA9_0011SA90.14100B+ARNA (8-mer)C111G112A113G114*C103G104A105G106cWWtSHtHScWW
13 IL_1SAQ_0021SAQ0.10080Double shearedB+ARNA (8-mer)C111G112A113G114*C103G104A105G106cWWtSHtHScWW
14 IL_4NVV_0854NVV0.00000A23S Ribosomal RNAC2376G2377A2378G2379*C2362G2363A2364G2365cWWtSHtHScWW
15 IL_2QBG_0882QBG0.08150B23S rRNAC2364G2365A2366G2367*C2350G2351A2352G2353cWWtSHtHScWW
16 IL_4IOA_0834IOA0.10160Double shearedX LSU rRNAC2343G2344A2345G2346*C2329G2330A2331G2332cWWtSHtHScWW
17 IL_3U5F_0883U5F0.26050618S rRNAC1729A1730A1731A1732*U1669G1670A1671G1672cWWtSHtHScWW
18 IL_4BPP_0874BPP0.21170A18S RRNAU1682A1683A1684A1685*U1640G1641A1642A1643cWWtSHtHScWW
19 IL_2QBG_0172QBG0.26970B23S rRNAG536G537A538G539*U554G555A556C557cWWtSHtHScWW
20 IL_3U5H_1203U5H0.28762525S rRNAC3004A3005A3006U3007*A3139G3140A3141G3144cWWtSHtHScWW
21 IL_4A1B_1174A1B0.28182126S RRNAC2993G2994A2995C2996*G3128G3129A3131G3133cWWtSHtHScWW
22 IL_4BPP_0034BPP0.23021A18S RRNAU37A38A39A40*U458G459C461A462cWWtSHtHScWW
23 IL_3U5F_0133U5F0.31820618S rRNAC186G187A188C189*G196A197A198G199cWWtSHtHScWW
24 IL_4IOA_0584IOA0.29490Double shearedX LSU rRNAU1530C1531A1532G1533*C1491A1492A1493G1494cWWtHScWW
25 IL_1VW3_0721VW30.29520A21S ribosomal RNAU2617A2618A2619C2620*G2631A2632A2633A2634cWWtSHtHScWW
26 IL_2IL9_0022IL90.72290MRibosomal Binding Domain of the IRES RNAA6058A6059U6060A6061*U6018A6019U6020U6021cWWncWWcWW
27 IL_2O3V_0022O3V0.84521Decoding loop relatedA+BRNA (23-mer)C7G8C9U10*A38A39A41G42cWWcWWacWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAG*CGAG8
CGAU*AGAG3
UGAC*GGAG2
CAAC*GGAG1
UAAC*GGAA1
CAAC*GAAG1
CAAA*UGAG1
UAAA*UGAA1
GGAG*UGAC1
CAAU*AGAACG1
CGAC*GGAAAG1
UAAA*UGACA1
CGAC*GAAG1
UCAG*CAAG1
UAAC*GAAA1
AAUA*UAUU1
CGCU*AAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GA14
AA*GA4
AA*AA2
AA*GAAC1
GA*GAAA1
AA*GAC1
GA*AA1
CA*AA1
AU*AU1
GC*AAA1
Annotations
  • (21)
  • Double sheared (4)
  • Double sheared (H) (1)
  • Decoding loop related (1)
  • Basepair signature
    cWW-tSH-tHS-cWW
    Heat map statistics
    Min 0.08 | Avg 0.40 | Max 0.95
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