#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_2O3V_0022O3V0.87331Decoding loop relatedA+BRNA (23-mer)C7G8C9U10*A38A39A41G42cWWcWWacWW
2 IL_2IL9_0022IL90.71390MRibosomal Binding Domain of the IRES RNAA6058A6059U6060A6061*U6018A6019U6020U6021cWWncWWcWW
3 IL_2QBG_0172QBG0.24090B23S rRNAG536G537A538G539*U554G555A556C557cWWtSHtHScWW
4 IL_4BPP_0874BPP0.17620A18S RRNAU1682A1683A1684A1685*U1640G1641A1642A1643cWWtSHtHScWW
5 IL_3U5F_0883U5F0.22810618S rRNAC1729A1730A1731A1732*U1669G1670A1671G1672cWWtSHtHScWW
6 IL_3U5H_1203U5H0.25862525S rRNAC3004A3005A3006U3007*A3139G3140A3141G3144cWWtSHtHScWW
7 IL_4A1B_1174A1B0.25112126S RRNAC2993G2994A2995C2996*G3128G3129A3131G3133cWWtSHtHScWW
8 IL_4BPP_0034BPP0.24191A18S RRNAU37A38A39A40*U458G459C461A462cWWtSHtHScWW
9 IL_4IOA_0834IOA0.14260Double shearedX LSU rRNAC2343G2344A2345G2346*C2329G2330A2331G2332cWWtSHtHScWW
10 IL_3V2F_0863V2F0.11760A23S Ribosomal RNAC2364G2365A2366G2367*C2350G2351A2352G2353cWWtSHtHScWW
11 IL_2QBG_0882QBG0.13210B23S rRNAC2364G2365A2366G2367*C2350G2351A2352G2353cWWtSHtHScWW
12 IL_1SAQ_0021SAQ0.00000Double shearedB+ARNA (8-mer)C111G112A113G114*C103G104A105G106cWWtSHtHScWW
13 IL_1SA9_0011SA90.10490B+ARNA (8-mer)C111G112A113G114*C103G104A105G106cWWtSHtHScWW
14 IL_3D0U_0023D0U0.16950Double shearedALysine Riboswitch RNAC67G68A69G70*C16G17A18G19cWWtSHtHScWW
15 IL_4A1B_0074A1B0.23660126S RRNAC162A163A164C165*G254G255A256G257cWWtSHntHScWW
16 IL_4BPP_0854BPP0.22640A18S RRNAU1625A1626A1627C1628*G1697G1698A1699A1700cWWtSHtHScWW
17 IL_1FJG_0591FJG0.28040Double sheared (H)A SSU rRNAU1481G1482A1483C1484*G1416G1417A1418G1419cWWtSHtHScWW
18 IL_4A1B_0054A1B0.28830126S RRNAC138A139A140C141*G125A126A127G128cWWtSHcWW
19 IL_3U5F_0133U5F0.28270618S rRNAC186G187A188C189*G196A197A198G199cWWtSHtHScWW
20 IL_4IOA_0584IOA0.28820Double shearedX LSU rRNAU1530C1531A1532G1533*C1491A1492A1493G1494cWWtHScWW
21 IL_1S72_0981S720.362500 LSU rRNAC2873G2874A2875G2876*C2881G2882A2883G2884cWWtSHtHScWW
22 IL_4A1B_1324A1B0.37050126S RRNAC3316G3317A3318U3319*A3300G3301A3302G3303cWWtSHtHScWW
23 IL_3U5F_0853U5F0.35960618S rRNAC1653G1654A1655U1656*A1744G1745A1746G1747cWWtSHtHScWW
24 IL_3DIR_0023DIR0.43690ARNA (174-MER)C70G71A72G73*C19G20A21G22cWWtSHtHScWW
25 IL_2AW7_0652AW70.46390A16S ribosomal RNAU1481G1482A1483C1484*G1416G1417A1418G1419cWWtSHtHScWW
26 IL_3U5H_1413U5H0.53280525S rRNAC3360G3361A3362U3363*A3342G3343A3344G3345cWWtSHntSscWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAG*CGAG8
CGAU*AGAG3
UGAC*GGAG2
CGCU*AAAAG1
AAUA*UAUU1
GGAG*UGAC1
UAAA*UGAA1
CAAA*UGAG1
CAAU*AGAACG1
CGAC*GGAAAG1
UAAA*UGACA1
CAAC*GGAG1
UAAC*GGAA1
CAAC*GAAG1
CGAC*GAAG1
UCAG*CAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GA14
AA*GA4
GC*AAA1
AU*AU1
AA*GAAC1
GA*GAAA1
AA*GAC1
AA*AA1
GA*AA1
CA*AA1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_13959.4Only in the parent motif
IL_13959.3
Compare
IL_3V2F_086, IL_4IOA_058, IL_1SAQ_002, IL_2QBG_088, IL_3U5F_085, IL_4A1B_117, IL_4A1B_132, IL_3U5H_141, IL_3U5H_120, IL_3U5F_088, IL_3D0U_002, IL_4IOA_083, IL_4A1B_005, IL_1FJG_059, IL_4A1B_007, IL_1S72_098, IL_3DIR_002, IL_2QBG_017, IL_3U5F_013, IL_2IL9_002, IL_2AW7_065, IL_1SA9_001IL_4BPP_003, IL_2O3V_002, IL_4BPP_087, IL_4BPP_085IL_2XZM_004, IL_2XZM_089
IL_41766.3
Compare
IL_2O3V_002IL_4BPP_003, IL_3V2F_086, IL_4IOA_058, IL_1SAQ_002, IL_2QBG_088, IL_3U5F_085, IL_4A1B_117, IL_4A1B_132, IL_3U5H_141, IL_3U5H_120, IL_3U5F_088, IL_3D0U_002, IL_4IOA_083, IL_4A1B_005, IL_1FJG_059, IL_4A1B_007, IL_1S72_098, IL_3DIR_002, IL_2QBG_017, IL_3U5F_013, IL_2IL9_002, IL_4BPP_087, IL_4BPP_085, IL_1SA9_001, IL_2AW7_065IL_2NOK_007, IL_2NOK_004, IL_1FJG_029, IL_2PN4_004, IL_3U5H_106, IL_3U5F_048, IL_2XZM_052, IL_3U5F_083, IL_280D_001, IL_3U5H_134, IL_3U5F_047, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_3TZR_003, IL_2XZM_091, IL_2AW7_036, IL_2A64_004, IL_1D4R_001, IL_3U5F_055, IL_1D4R_003, IL_4EYA_008, IL_4IOA_041, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3R2D_002, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_2XZM_002, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_1GID_001, IL_1F7Y_003, IL_4EYA_010, IL_2XZM_088, IL_4EYA_012

Children motifs

Child motifCommon motif instancesOnly in IL_13959.4Only in the child motif
IL_13959.5
Compare
IL_4BPP_003, IL_4IOA_058, IL_1SAQ_002, IL_2QBG_088, IL_3U5F_085, IL_4A1B_117, IL_4A1B_132, IL_3U5H_141, IL_3U5H_120, IL_3U5F_088, IL_2O3V_002, IL_3D0U_002, IL_4IOA_083, IL_4A1B_005, IL_1FJG_059, IL_4A1B_007, IL_1S72_098, IL_3DIR_002, IL_2QBG_017, IL_3U5F_013, IL_2IL9_002, IL_4BPP_087, IL_4BPP_085, IL_1SA9_001, IL_2AW7_065IL_3V2F_086IL_1VW3_072, IL_4NVV_085
Annotations
  • (20)
  • Double sheared (4)
  • Double sheared (H) (1)
  • Decoding loop related (1)
  • Basepair signature
    cWW-tSH-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 0.95
    Help

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