Motif IL_59745.1 Version IL_59745.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR6_002 | 4KR6 | 0.5059 | 8 | D | RNA (39-MER) | C | 25 | A | 26 | A | 27 | G | 28 | * | U | 8 | U | 16 | G | 18 | cWW | ncWW | cWW | |
| 2 | IL_3MEI_004 | 3MEI | 0.0000 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW | |
| 3 | IL_2O3V_003 | 2O3V | 0.1428 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | |
| 4 | IL_4CUV_040 | 4CUV | 0.5649 | 0 | 1 | 25S RRNA | U | 1111 | A | 1112 | G | 1113 | U | 1114 | * | G | 968 | C | 969 | A | 970 | cWW | ncWW | cWW | |
| 5 | IL_1VW3_022 | 1VW3 | 0.6469 | 0 | A | 21S ribosomal RNA | G | 866 | A | 867 | G | 868 | U | 869 | * | G | 727 | C | 728 | C | 729 | cWW | ncWW | cWW | |
| 6 | IL_4NVV_035 | 4NVV | 0.6856 | 0 | A | 23S Ribosomal RNA | G | 929 | G | 930 | C | 931 | C | 932 | * | G | 938 | C | 939 | C | 940 | ncWW | ncWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*UAGUGUCCUUG | 1 |
| CGCC*GCCUG | 1 |
| CGCU*AAAAG | 1 |
| GCA*UAGU | 1 |
| GAGU*GCC | 1 |
| GGCC*GCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGUGUCCUU | 1 |
| GC*CCU | 1 |
| GC*AAA | 1 |
| C*AG | 1 |
| AG*C | 1 |
| GC*C | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_59745.1 | Only in the parent motif |
|---|---|---|---|
| IL_55214.1 Compare | IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002 | IL_4CUV_040 | IL_1VW3_029, IL_1VW3_056, IL_1S72_053 |
Children motifs
| Child motif | Common motif instances | Only in IL_59745.1 | Only in the child motif |
|---|---|---|---|
| IL_51342.1 Compare | IL_4CUV_040, IL_1VW3_022 | IL_3MEI_004, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002 | IL_1VX2_016, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_4A1B_070, IL_4N0T_004 |
| IL_62615.1 Compare | IL_3MEI_004, IL_2O3V_003 | IL_4CUV_040, IL_1VW3_022, IL_4KR6_002, IL_4NVV_035 | IL_3U5F_017, IL_4QCN_106 |
| IL_14081.1 Compare | IL_4KR6_002 | IL_4NVV_035, IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4CUV_040 | IL_2QBZ_002, IL_1VWW_066 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.47 | Max 0.87
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