Motif IL_59745.1 Version IL_59745.1 of this group appears in releases 1.15 to 1.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	3-5	3-6	4-5
1	IL_4KR6_002	4KR6	0.5059	8	D	RNA (39-MER)	C	25	A	26	A	27	G	28	*	U	8	U	16	G	18	cWW		ncWW	cWW
2	IL_3MEI_004	3MEI	0.0000	2	B+A	RNA (23-mer)	C	7	G	8	C	9	C	10	*	G	13	C	15	G	17	cWW		cWS	cWW
3	IL_2O3V_003	2O3V	0.1428	2	B+A	RNA (23-mer)	C	30	G	31	C	32	U	33	*	A	15	A	17	G	19	cWW		cWS	cWW
4	IL_4CUV_040	4CUV	0.5649	0	1	25S RRNA	U	1111	A	1112	G	1113	U	1114	*	G	968	C	969	A	970	cWW		ncWW	cWW
5	IL_1VW3_022	1VW3	0.6469	0	A	21S ribosomal RNA	G	866	A	867	G	868	U	869	*	G	727	C	728	C	729	cWW		ncWW	cWW
6	IL_4NVV_035	4NVV	0.6856	0	A	23S Ribosomal RNA	G	929	G	930	C	931	C	932	*	G	938	C	939	C	940	ncWW	ncWW	ncwW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAG*UAGUGUCCUUG	1
CGCC*GCCUG	1
CGCU*AAAAG	1
GCA*UAGU	1
GAGU*GCC	1
GGCC*GCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*AGUGUCCUU	1
GC*CCU	1
GC*AAA	1
C*AG	1
AG*C	1
GC*C	1

Release history

Release	1.15
Date	2014-06-20
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_59745.1	Only in the parent motif
IL_55214.1 Compare	IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002	IL_4CUV_040	IL_1VW3_029, IL_1VW3_056, IL_1S72_053

Children motifs

Child motif	Common motif instances	Only in IL_59745.1	Only in the child motif
IL_51342.1 Compare	IL_4CUV_040, IL_1VW3_022	IL_3MEI_004, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002	IL_1VX2_016, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_4A1B_070, IL_4N0T_004
IL_62615.1 Compare	IL_3MEI_004, IL_2O3V_003	IL_4CUV_040, IL_1VW3_022, IL_4KR6_002, IL_4NVV_035	IL_3U5F_017, IL_4QCN_106
IL_14081.1 Compare	IL_4KR6_002	IL_4NVV_035, IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4CUV_040	IL_2QBZ_002, IL_1VWW_066

Annotations: (6)
Basepair signature: cWW-L-cWS-cWW
Heat map statistics: Min 0.14 | Avg 0.47 | Max 0.87

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Coloring options: Nucleotide numbers

Motif IL_59745.1 Version IL_59745.1 of this group appears in releases 1.15 to 1.15 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_59745.1 Version IL_59745.1 of this group appears in releases 1.15 to 1.15

Download

Csv

Json