#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-81-105-65-78-9
1 IL_8C3A_0528C3A0.18710SSU/LSU pseudoknot1 LSU rRNAU1169G1170C1171C1172G1173G1174A1175A1176*U1321A1322cWWnchHcWW
2 IL_5TBW_0495TBW0.16050SSU/LSU pseudoknot1 LSU rRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWchHcWW
3 IL_8C3A_4238C3A0.15080SSU/LSU pseudoknotCM SSU rRNAA548G549G550G551C552A553A554G555*C585U586cWWncSHcWW
4 IL_4V88_4134V880.13490SSU/LSU pseudoknotA6 SSU rRNAA550G551G552G553C554A555A556G557*C587U588cWWcSHcWW
5 IL_5J7L_0245J7L0.00000SSU/LSU pseudoknotAA SSU rRNAC504G505G506C507U508A509A510C511*G540G541cWWncSHntSWcWW
6 IL_4LFB_0204LFB0.06710SSU/LSU pseudoknotA SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWcSHcWW
7 IL_6CZR_1326CZR0.17500SSU/LSU pseudoknot1a SSU rRNAC488G489G490C491C492A493A494C495*G524G525ncSHcWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGCCGGAA*UA2
AGGGCAAG*CU2
CGGCCAAC*GG2
CGGCUAAC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
GCCGGA*2
GGGCAA*2
GGCCAA*2
GGCUAA*1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • SSU/LSU pseudoknot (7)
  • Basepair signature
    cWW-L-cWW-L-L-R-cSH
    Heat map statistics
    Min 0.07 | Avg 0.15 | Max 0.30
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