Motif IL_15261.1 Version IL_15261.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-8 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_052 | 8C3A | 0.1871 | 0 | SSU/LSU pseudoknot | 1 | LSU rRNA | U | 1169 | G | 1170 | C | 1171 | C | 1172 | G | 1173 | G | 1174 | A | 1175 | A | 1176 | * | U | 1321 | A | 1322 | cWW | nchH | cWW | ||
2 | IL_5TBW_049 | 5TBW | 0.1605 | 0 | SSU/LSU pseudoknot | 1 | LSU rRNA | U | 1173 | G | 1174 | C | 1175 | C | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | * | U | 1325 | A | 1326 | cWW | chH | cWW | ||
3 | IL_8C3A_423 | 8C3A | 0.1508 | 0 | SSU/LSU pseudoknot | CM | SSU rRNA | A | 548 | G | 549 | G | 550 | G | 551 | C | 552 | A | 553 | A | 554 | G | 555 | * | C | 585 | U | 586 | cWW | ncSH | cWW | ||
4 | IL_4V88_413 | 4V88 | 0.1349 | 0 | SSU/LSU pseudoknot | A6 | SSU rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW | ||
5 | IL_5J7L_024 | 5J7L | 0.0000 | 0 | SSU/LSU pseudoknot | AA | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | U | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | ntSW | cWW | |
6 | IL_4LFB_020 | 4LFB | 0.0671 | 0 | SSU/LSU pseudoknot | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cSH | cWW | ||
7 | IL_6CZR_132 | 6CZR | 0.1750 | 0 | SSU/LSU pseudoknot | 1a | SSU rRNA | C | 488 | G | 489 | G | 490 | C | 491 | C | 492 | A | 493 | A | 494 | C | 495 | * | G | 524 | G | 525 | ncSH | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGCCGGAA*UA | 2 |
AGGGCAAG*CU | 2 |
CGGCCAAC*GG | 2 |
CGGCUAAC*GG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCCGGA* | 2 |
GGGCAA* | 2 |
GGCCAA* | 2 |
GGCUAA* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- SSU/LSU pseudoknot (7)
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Heat map statistics
- Min 0.07 | Avg 0.15 | Max 0.30
Coloring options: